Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30904X
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   9e-05
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea...    29   1.6  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.0  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    27   8.7  
At3g11080.1 68416.m01339 disease resistance family protein conta...    27   8.7  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +3

Query: 303 FGSLIIGYARNPSLKQQLFSYAILGFALSE 392
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein GI:2739374
           from [Arabidopsis thaliana]; no characterized homologs
          Length = 471

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 524 MAVHSNSIH*NLICRMAVVVFLKVNSLESEEQQERHHKTEQTHS 393
           MA+  N  H + + RM    FLK  SL +EE  E +H     H+
Sbjct: 1   MAIEENRSHNDYLRRMTFAAFLKSGSLAAEE--ETYHSDGDHHN 42


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 38  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 148
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 242  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 114
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At5g11040.1 68418.m01290 expressed protein weak similarity to
            hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 225  NVLSDRCGLEGPHCRELCRDSRYHLCMGG 139
            NVL  R G   P+    CR   +H+C+ G
Sbjct: 1155 NVLRARAGTASPNEPIFCRGPPFHVCVAG 1183


>At3g11080.1 68416.m01339 disease resistance family protein contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 943

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 279 NQLLPLSLPSTNESRSRVNVLSDRCGLEGPHCRELCRD 166
           NQL  L    T   R   +   +  GL GP   E+CRD
Sbjct: 836 NQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRD 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,249
Number of Sequences: 28952
Number of extensions: 255005
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)