Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30901
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   2.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    26   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   7.1  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   7.1  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 420 VHCSVYSSQYMVKNGVDDAVDIYSGAGGTVADVRGRCGGVNA 295
           V C  + S  +V    D  V ++  +GG    +RG  G VN+
Sbjct: 356 VLCLTFDSTLLVSGSADCTVKLWHFSGGKRITLRGHTGPVNS 397


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 281 SCTPPALTPPHRPRTSATVPPAPL*MSTASSTPFFTIYC 397
           SCT     PP    T+   P  P    T+SSTP  T  C
Sbjct: 392 SCTTSTSIPPTGNSTTPVTPTVP---PTSSSTPLTTTNC 427


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 281  SCTPPALTPPHRPRTSATVPPAPL*MSTASSTP 379
            S  PP   PP  P    + PP PL  S+A S P
Sbjct: 1713 SVPPPPSAPP-MPAGPPSAPPPPLPASSAPSVP 1744


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 89  TNIDLGKNLIKDGLVLV--EQVRDSRLA--TLMAEYRAAQEHAKSSRLNLWRHGD 241
           +  DL ++L+++GL  +  E  R+   +  +       AQ+HA+  +L +W   D
Sbjct: 90  SEFDLAESLLREGLAKLRPEATRNEGTSENSYFVSLEEAQDHAQQYKLGIWGPSD 144


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 290  PPALTPPHRPRTSATVPPAPL*MSTASSTP 379
            PP  T P  P  SA +PP P+  + A   P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 232 PPQVESRALGVLLSGAILGHQCRQSAVTNLLH*HEPIFDKVLAQINV 92
           P      AL   L  A L H+      T +LH + P++D   A  N+
Sbjct: 148 PGDSSEAALEDTLETASLAHRLALKLNTGVLHFYSPVYDTTAALENI 194


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 200 HAKSSRLNLWRHGDITEDVQWNSGCV 277
           HA     N W HG     ++W  G V
Sbjct: 276 HAAPGNQNSWNHGGYLNQMEWLDGTV 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,642
Number of Sequences: 5004
Number of extensions: 58434
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)