Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30901
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 42 4e-04
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 33 0.26
12_02_1057 + 25733376-25735439 31 1.4
09_03_0203 + 13475118-13475447,13475529-13475660,13475924-134761... 31 1.4
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 31 1.4
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 31 1.4
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 29 3.2
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 29 4.2
09_04_0402 - 17304828-17305622 29 4.2
07_01_0516 - 3850252-3852870 29 4.2
12_01_0048 + 413959-414621 29 5.6
12_02_0988 - 25064023-25064327,25064425-25064575,25064995-250652... 28 7.4
09_06_0313 + 22240971-22242176 28 9.7
06_03_0013 - 15393830-15394060,15394238-15394672 28 9.7
>02_04_0039 - 19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 53 GSPAAVTLVDPNTNIDLGKNLIKDGLVLVEQVR--DSR-LATLMAEYRAAQEHAKSSRLN 223
G+ VTLVD T + ++++GL +E+ + D+R + QE AK RL
Sbjct: 902 GTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQ 961
Query: 224 LWRHGDITED 253
+W++GD+ D
Sbjct: 962 IWQYGDVESD 971
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 281 SCTPPALTPPHRPRTSATVPPAPL*MSTASSTPFFT 388
S +PP+LTPP P +T P +P + ASS+ T
Sbjct: 40 SLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTT 75
>12_02_1057 + 25733376-25735439
Length = 687
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 290 PPALTPPHRPRTSATVPPAP 349
PP L PP RP +S+ PP+P
Sbjct: 257 PPPLPPPSRPPSSSPAPPSP 276
>09_03_0203 +
13475118-13475447,13475529-13475660,13475924-13476119,
13476281-13476385,13476726-13476803,13477269-13477346,
13477655-13477983
Length = 415
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = +2
Query: 56 SPAAVTLVDPNTNIDLGKNLIKDGLVLVEQVRDSRLAT---LMAEYRAAQEHAKSSRLNL 226
S + L+ P + G+ L++D L E++RD T +MA + + A+ R+
Sbjct: 204 SQTRIRLLAPEDPDERGE-LVRDAKTLWEKLRDGIAGTNQEVMATVDSLRRKAQPERVPP 262
Query: 227 WRHGDITEDVQWNSGCVASCTPPALTPPHRPRTSATVP 340
IT QW G A P P H P T T P
Sbjct: 263 HSSAPITS--QWQGGFAAFAGPTQSVPLHAP-TYGTNP 297
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 266 SGCVASCTPPALTPPHRPRTSATVPPAPL*MSTASST 376
+G VA PPA T RP+TS PAP A ST
Sbjct: 179 TGDVAVEAPPAPTTRRRPQTSTEAAPAPTTRRRAQST 215
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 176 AEYRAAQEHAKSSRLNLWRHGDITEDVQW-NSGCVASCTPPALTPPHRPRTSATVPPAP 349
AE +E + L+ WR+ + D+ W G P + P +P + +PP P
Sbjct: 228 AEEEEEEEEEEEEELSYWRNDFVYGDIVWARLGKRQPVWPGVVVDPAQPAAAQALPPQP 286
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 275 VASCTPPALTPPHRPRTSATVPPAP 349
+A PP L PP P+ S T PP P
Sbjct: 48 MAQRLPPELMPPSPPKASPTPPPQP 72
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 307 WRQRRGRTASDAPRIPLHVLGDVTVPPQVESRALGVLLSGA 185
WR+RRGR PR +L DVT E G L+ G+
Sbjct: 254 WRERRGRWWRRRPRCEEELLVDVTRSSVHEGWPAGALVQGS 294
>09_04_0402 - 17304828-17305622
Length = 264
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 305 PPHRPRTSATVPPAPL*MSTASST 376
PPH P T PP P +ST++ST
Sbjct: 14 PPHPPLFKPTTPPPPPLLSTSTST 37
>07_01_0516 - 3850252-3852870
Length = 872
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 278 ASCTPPALTPPHRPRTSATVPPAP 349
++ PP L PP P TS +PP P
Sbjct: 7 SAAPPPRLLPPQPPPTSRPLPPPP 30
>12_01_0048 + 413959-414621
Length = 220
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 VASCTPPALTPPHRP-RTSATVPPAPL*MSTASSTPFFT 388
+A+ +PP L P T+ATV PAP +S+A + P T
Sbjct: 1 MAAASPPLLPTTVLPANTTATVSPAPTSVSSADAKPAAT 39
>12_02_0988 -
25064023-25064327,25064425-25064575,25064995-25065259,
25065640-25065836
Length = 305
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 215 ASSWRAPERRDTRPSMSPVGCHEPAP 138
A+S P R RPS+ P GC AP
Sbjct: 23 AASSPPPRSRGRRPSLPPAGCFHAAP 48
>09_06_0313 + 22240971-22242176
Length = 401
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 287 TPPALTPPHRPRTSATVPPAPL*MSTA 367
T PAL P H PR++A PP S A
Sbjct: 3 TSPALRPAHIPRSTAVRPPCATPFSRA 29
>06_03_0013 - 15393830-15394060,15394238-15394672
Length = 221
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = -2
Query: 382 EWRGRCCRHLQWCRWHSCGC-----AWAMWWRQ 299
EW R +W RWH G AWA W R+
Sbjct: 145 EWLQREGSSKEWIRWHCVGTVAKRRAWAAWTRR 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,847,140
Number of Sequences: 37544
Number of extensions: 453819
Number of successful extensions: 2105
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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