Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30901
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              31   1.4  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   3.2  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_19129| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   7.5  
SB_2995| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         28   9.9  

>SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +2

Query: 14  VVGKRLLLNVEIRGSPAAVTLVDPNTNIDLGKNLIKDGLVLVEQVRDSRLATLMAEYRAA 193
           V+ ++ LLNVE +        V      D+GK+L+ DG VLVE+ ++ RL  +M EYR A
Sbjct: 630 VLNRQFLLNVEYKNGGQEFVSVMTEGGDDVGKSLVADGFVLVEKRKEKRLQKMMEEYRKA 689

Query: 194 QEHAKSSRLNLWRHGDITED--VQWNSGCVASCTP 292
           Q+ A+++RLNLWR+GD TED     N GC    +P
Sbjct: 690 QDTARTTRLNLWRYGDFTEDDARTQNGGCEFFSSP 724


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 254 VQWNSGCVASCTPPALTPPHRPRTSATVPPAPL*MSTASSTP 379
           +Q+N     S TPP  TP H P  S      P  +ST S TP
Sbjct: 370 IQYNPVSTPSNTPPVSTPSHTPPVSTPSHTPP--VSTPSHTP 409



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 281 SCTPPALTPPHRPRTSATVPPAPL*MSTASST-PFFT 388
           S TPP  TP H P  S      P  +ST S+T P FT
Sbjct: 496 SHTPPVFTPSHTPPVSTPSNSPP--VSTPSNTLPVFT 530


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 367 CCRHLQWCRWHSCGCAWAMWWRQRRGRTASDAPRI 263
           CC    WC    C CAW   W+  +G  A  A R+
Sbjct: 273 CC---PWCM-QRCACAWVTKWKMTQGYRAWRAARL 303


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 ASCTPPALTPPHRPRTSATVPPAPL*MSTASSTPFFT 388
           A   PP+  PP      +T+PP P+  +T++  P+ T
Sbjct: 319 APAPPPSQAPPPPKTIPSTLPPPPVPSATSAPPPWAT 355


>SB_19129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 260 WNSGCVASCTPPALTPPHRPRTSATVPPA 346
           W  GC+++   PA  P H PR      PA
Sbjct: 310 WAMGCISTSQKPAPLPSHTPRPREDDKPA 338


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 388  GKEWRGRCCRHLQWCRWHSCGCAWAMWWRQRRGRTAS 278
            G EW  R  R   W  W+  G  W+ W R+  GRT S
Sbjct: 962  GYEWTERWHRKT-WDTWNE-GPTWSKWQRRPTGRTWS 996


>SB_2995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -3

Query: 351 SGAGGTVADVRGRCGGVNAGG-VQL-ATHPEFHCTSSVMSPCRHKLSRELLACS*AARYS 178
           S AGG +   + +CG  ++GG ++L A      CT+S+ + C   L+   ++ S A   S
Sbjct: 84  SNAGGKLQSSKEKCGLRSSGGELELSAETTAVACTTSLTADCEVVLTANKISSSVALAVS 143

Query: 177 AI 172
           A+
Sbjct: 144 AL 145


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 53  GSPAAVTLVDPNTNIDLGKNLIKDGLVLVEQV--RDSRLATLMAEYRAAQEHAKSSRLNL 226
           G+P A  +V    ++  G N+  DG V  E +  RD+ L   ++E  A +   + S + +
Sbjct: 266 GTPGAYGVVTLPFSVREGINIFLDGFVPTENLRFRDTSLVFKVSE-TADKVSIEPSVIGV 324

Query: 227 WRHGDITEDVQWN 265
           W  G + ED Q N
Sbjct: 325 W-PGGLNEDFQMN 336


>SB_43069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 397 TVYGKEWRGRC----CRHLQWCRWHSCGCAWAMWWRQRRGRT 284
           +++G+  R RC    C+  QW  W  C  A   +  QRR R+
Sbjct: 22  SLWGRRRRRRCNPQNCQVGQWVPWSRCNLACGDYGTQRRTRS 63


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 275 VASCTPPALTPPHRPRTSATVPPAPL*MSTASSTPFFTI 391
           V+S + P    P  P+T+A V   P     +SS P FT+
Sbjct: 261 VSSSSQPPTETPSPPQTNAEVSSTPETQQDSSSLPDFTV 299


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 242 ITEDVQWNSGCVASCTPPALTPPHRPRTSAT 334
           +T  V+  SG      PPA TPP +P   AT
Sbjct: 1   MTLSVKGGSGEQTQANPPATTPPSQPTQPAT 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,669,098
Number of Sequences: 59808
Number of extensions: 494046
Number of successful extensions: 1759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)