Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30901
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle... 35 0.071
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 34 0.094
At5g11550.1 68418.m01347 expressed protein 33 0.29
At1g77260.1 68414.m08998 dehydration-responsive protein-related ... 31 1.2
At1g69280.1 68414.m07943 expressed protein 31 1.2
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 30 1.5
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA... 30 2.0
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 4.6
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 4.6
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 28 6.1
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family... 28 6.1
At1g70990.1 68414.m08190 proline-rich family protein 28 6.1
At3g06080.2 68416.m00695 expressed protein identical to unknown ... 28 8.1
>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 991
Score = 34.7 bits (76), Expect = 0.071
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 53 GSPAAVTLVDPNTNIDLGKNLIKDGLVLVEQVRD----SRLATLMAEYRAAQEHAKSSRL 220
G+ VTL+ + I + ++++G+ +E+ + + A L A QE A+ SR+
Sbjct: 907 GTEFVVTLIAVDDEISVNAAMLQEGIARMEKRQKWGHKGKQAALDA-LEKFQEEARKSRI 965
Query: 221 NLWRHGDITED 253
+W++GDI D
Sbjct: 966 GIWQYGDIESD 976
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 34.3 bits (75), Expect = 0.094
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 53 GSPAAVTLVDPNTNIDLGKNLIKDGLVLVEQVRDSRLATLMAEYRAA---QEHAKSSRLN 223
G+ VTL+ + I + ++++G+ +E+ R A A Q+ A+ SR
Sbjct: 903 GTELVVTLIAVDDEISVNAAMLQEGIARMEKRRRWEPKDKQAALDALEKFQDEARKSRTG 962
Query: 224 LWRHGDITEDVQWN 265
+W +GDI D + N
Sbjct: 963 IWEYGDIQSDDEDN 976
>At5g11550.1 68418.m01347 expressed protein
Length = 314
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -1
Query: 329 RMCVGDVVAST-PGAYS*RRTPNSTARPR*CHRAATS*VASSWRAPERRDTRPSMSPVGC 153
R C V++ T P RR +T+ +TS + WR P D PS +P
Sbjct: 24 RRCTQSVLSPTSPHQQQPRRKATTTSSSSSSSSTSTSQSFTQWRFPHHLDQTPSTAPPPP 83
Query: 152 HEPAP 138
H P P
Sbjct: 84 HPPPP 88
>At1g77260.1 68414.m08998 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 655
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 239 DITEDVQWNSGCVASCTPPALTPPHRPRTSATVPPAP 349
++TE +Q N VA+ P +PP RPR + PP P
Sbjct: 54 NVTEAIQTNITSVAAVAP---SPPPRPRLKISPPPLP 87
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Frame = -2
Query: 376 RGRCCRHLQWCRWHSC----GCAW 317
R +CC WCRW SC C W
Sbjct: 329 RLKCCPCFSWCRWPSCDYNSSCGW 352
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 290 PPALTPPHRPRTSATVPPAPL 352
PPA+TPP P A PP PL
Sbjct: 115 PPAITPPLSPPPPAITPPPPL 135
>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
identical to half-molecule ABC transporter ATM3
GI:9964121 from [Arabidopsis thaliana]; almost identical
to mitochondrial half-ABC transporter STA1 GI:9187883
from [Arabidopsis thaliana]; identical to cDNA
mitochondrial half-ABC transporter (STA1 gene)GI:9187882
Length = 728
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 141 STNTSPSLIRFLPRSMFVLGSTRVTAAGDPRISTFKSSLLPTTS 10
S + SPS IRF+ RS + G T+ +P +T K+ + TTS
Sbjct: 68 SPSPSPSPIRFVQRSSMLNGRLFSTSTPNPDQTTTKTKEIKTTS 111
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 275 VASCTPP-ALTPPHRPRTSATVPPAPL 352
VAS PP A PP P AT PPAPL
Sbjct: 90 VASPPPPVASPPPATPPPVATPPPAPL 116
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 275 VASCTPP-ALTPPHRPRTSATVPPAPL 352
VAS PP A PP P AT PPAPL
Sbjct: 90 VASPPPPVASPPPATPPPVATPPPAPL 116
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 263 NSGCVASCTPPALTPPH--RPR-TSATVPPAPL*MSTASSTP 379
+ G S +PP +PPH RP+ A PP P + A+S P
Sbjct: 520 HDGKAISFSPPTPSPPHPVRPQLAQAGAPPPPPPLPAAASKP 561
>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
protein identical to cDNA nematode responsive protein
GI:2213418
Length = 695
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 189 PLRSTPRARDSTCGGTVTSPRTCSGIRGA 275
P +S PRAR S G T +SP GI G+
Sbjct: 586 PTKSYPRARKSRQGSTGSSPSGPQGISGS 614
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 272 CVASCTPPALTPPHRPRTSATVPPAPL 352
C+ + PP+ PP P S PP PL
Sbjct: 87 CLQNIPPPSPPPPSPPPPSQACPPPPL 113
>At3g06080.2 68416.m00695 expressed protein identical to unknown
protein GB:AAF30301 from [Arabidopsis thaliana]
Length = 469
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 200 APERRDTRPSMSPVGCHEPAPLTR 129
A +R+D PS+ +G H PAPL R
Sbjct: 399 AAQRKDGHPSLYYLGPHGPAPLHR 422
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,950
Number of Sequences: 28952
Number of extensions: 325326
Number of successful extensions: 1169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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