Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30900
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 136 4e-33
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 33 0.033
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 30 0.31
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.41
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 29 0.72
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.72
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 28 1.3
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 2.2
SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T... 26 6.7
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.9
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 8.9
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 136 bits (328), Expect = 4e-33
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = -1
Query: 506 GKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFE 327
G PADVYLIDEPSAYLDSEQR++A+KVI+RFI+++++T F+VEHDFIMATYLADRVI+FE
Sbjct: 471 GMPADVYLIDEPSAYLDSEQRIIASKVIRRFIVNSRKTAFIVEHDFIMATYLADRVILFE 530
Query: 326 GTPSSNATAHAPQSLLNGMNKFLES 252
G PS +A + PQSLL GMN FL++
Sbjct: 531 GQPSRDARCNPPQSLLTGMNTFLKN 555
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -2
Query: 715 LHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGE 536
L IS KPQ I+PK QG VR L KIR A+++ +F ++V KP+ I+ I+DQEV NLSGGE
Sbjct: 401 LKISMKPQTIAPKFQGTVRMLFLKKIRAAFLNGKFQSEVCKPLSIDNIIDQEVLNLSGGE 460
Query: 535 LQR 527
LQR
Sbjct: 461 LQR 463
Score = 71.7 bits (168), Expect = 1e-13
Identities = 40/87 (45%), Positives = 51/87 (58%)
Frame = -1
Query: 515 AVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVI 336
AV + ADVY+ DEPS+YLD +QRL A +VI R +L VVEHD + YL+D V
Sbjct: 232 AVATQKADVYMFDEPSSYLDIKQRLKAGRVI-RSLLATTNYVIVVEHDLSVLDYLSDFVC 290
Query: 335 VFEGTPSSNATAHAPQSLLNGMNKFLE 255
V G PS P S+ G+N FL+
Sbjct: 291 VLYGVPSMYGVVTLPYSVREGINIFLD 317
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = -3
Query: 252 LGITFRRDPNNFRPRINKHASVKDIEQKRAGQYFFLED 139
L +TFRRDPN RPRINK S D EQK AG YFFLE+
Sbjct: 556 LDVTFRRDPNTLRPRINKFDSQMDQEQKNAGNYFFLEN 593
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -2
Query: 604 DVMKPMKIEEIMDQEVQNLSGGELQR 527
+VM ++ ++++EV +LSGGELQR
Sbjct: 202 EVMDHTDLQNLLNREVGHLSGGELQR 227
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 33.5 bits (73), Expect = 0.033
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -1
Query: 542 W*VTASSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKR-TGFVVEHDFI 366
W + + +RA+F P D+ L+DEP+ +LD +V ++ F+++ K + +V HD
Sbjct: 553 WKMKLALTRAMFKNP-DILLLDEPTNHLD----VVNVAWLENFLVNQKDVSSIIVSHDSG 607
Query: 365 MATYLADRVIVFE 327
++ +I +E
Sbjct: 608 FLDHVVQAIIHYE 620
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -1
Query: 542 W*VTASSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIM 363
W + S +RA+F +P D+ L+DEPS LD + + + ++ K VV HD
Sbjct: 359 WRMRLSLARALFCQP-DLLLLDEPSNMLD----VPSIAFLSEYLQTYKNIVLVVSHDRSF 413
Query: 362 ATYLADRVI 336
+A +I
Sbjct: 414 LNEVATDII 422
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 491 VYLIDEPSAYLDSEQRLVAAKVIKRF 414
+ ++DEP+ +LD E + +KRF
Sbjct: 657 ILILDEPTNHLDMESMDALTRAVKRF 682
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -1
Query: 542 W*VTASSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKR-TGFVVEHDFI 366
W + +RA+ K AD+ L+DEP+ +LD + ++ ++ K T +V HD
Sbjct: 567 WKMKLELARAMLQK-ADILLLDEPTNHLD----VANIAWLEAYLTSQKNITCLIVSHDSS 621
Query: 365 MATYLADRVIVFEG 324
++ +I +EG
Sbjct: 622 FLDHVCTDIIHYEG 635
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 316 EGVPSNTITRSARYVAIIKSCSTTKPVRLAWRMNLLITL 432
E +P N +R +YVAI K +T+ P R+ + +L L
Sbjct: 112 EKIPVNEDSRKPKYVAIKKIYATSSPARIYNELEILYLL 150
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 482 IDEPSAYLDSEQ---RLVAAKVIKRFILHAKRTGFVVEHDFIMATY 354
ID S LDS R A V+ IL+ + TGF +DFI AT+
Sbjct: 965 IDYDSPELDSVYEGVRTTIAVVLSDLILNVEPTGFSFVYDFIRATF 1010
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/97 (25%), Positives = 40/97 (41%)
Frame = -1
Query: 521 SRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADR 342
+RAV P + L+DE ++ LDS+ ++ K + RT V+ H + AD
Sbjct: 579 ARAVISDPK-ILLLDEATSALDSKSEVLVQKALDN--ASRSRTTIVIAHR-LSTIRNADN 634
Query: 341 VIVFEGTPSSNATAHAPQSLLNGMNKFLESWESPSAG 231
++V +H LNG L + S G
Sbjct: 635 IVVVNAGKIVEQGSHNELLDLNGAYARLVEAQKLSGG 671
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 32 FIIVLHLIGKYTVGRSSPCDSNNIYKYNNVYIF 130
+++ + + Y + P + NNIY NN+++F
Sbjct: 96 YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128
>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 68
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 327 GYTFVKCDRTCASIAPQWDEQIPGIL 250
G V+CD T + DEQ PGI+
Sbjct: 7 GLLLVECDPTVKQLILNMDEQSPGIV 32
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 104 YKYNNVYIFLY*SSKKKYWPAR 169
Y+ N++Y+ L + K K WP +
Sbjct: 1467 YRQNDIYVLLNETMKDKSWPGK 1488
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 211 RSEIIRIPAEGDSQDSRNLFIPLRSD*GACAVAFDEG 321
R ++ P++ ++QDS +L + + + G A+A +EG
Sbjct: 8 RRALVETPSDLNAQDSDSLSVSTKEELGDDALAAEEG 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,102
Number of Sequences: 5004
Number of extensions: 63916
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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