Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30900
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   2e-27
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11)              31   1.3  
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     31   1.3  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   7.2  
SB_23783| Best HMM Match : ABC_tran (HMM E-Value=6.7e-07)              28   7.2  

>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score =  120 bits (288), Expect = 2e-27
 Identities = 58/72 (80%), Positives = 62/72 (86%)
 Frame = -1

Query: 461 LDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSL 282
           L  EQRLVAAKVIKRFILHAK+TGFVVEHDFIMATYLADRVIVFEG PS    A+ PQ+L
Sbjct: 457 LSGEQRLVAAKVIKRFILHAKKTGFVVEHDFIMATYLADRVIVFEGIPSVKTLANTPQTL 516

Query: 281 LNGMNKFLESWE 246
           L GMN+FLES E
Sbjct: 517 LTGMNRFLESLE 528



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 42/57 (73%), Positives = 52/57 (91%)
 Frame = -2

Query: 727 QLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEIMDQEV 557
           ++P L++SYKPQKISPKSQG VR LLH KIRD+YIHPQF+ DV+KP++IE+IMDQEV
Sbjct: 376 EVPMLNVSYKPQKISPKSQGTVRQLLHTKIRDSYIHPQFIADVIKPLQIEQIMDQEV 432



 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = -3

Query: 252 LGITFRRDPNNFRPRINKHASVKDIEQKRAGQYFFLED 139
           L ITFRRDP+NFRPRINK  SVKD EQKR+G YFFLED
Sbjct: 527 LEITFRRDPSNFRPRINKLHSVKDTEQKRSGNYFFLED 564



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 386 VVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLESW 249
           VVEHD  +  YL+D +    GTP +      P S+  G+N FL+ +
Sbjct: 246 VVEHDLSVLDYLSDFICCLYGTPGAYGVVTLPFSVREGINIFLDGF 291


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
 Frame = -1

Query: 521 SRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFI--LHAKRTGFVVEHDFIMATYLA 348
           +RAV+   AD+YL+D+P   +DS+   V   + +R I  + +K+T  +V H  +     A
Sbjct: 621 ARAVYAD-ADIYLLDDPLGTVDSK---VGRHLFERCIQGILSKKTRILVTHQ-LQYLQNA 675

Query: 347 DRVIVFEGTPSSNATAHAPQSLLNGMNKFLES-WESPSAGILIISDR 210
           D +++ +    +   ++A  S  +    FLE   E+P     ++ DR
Sbjct: 676 DHILLMKDGGITREGSYAEISQSSEEISFLEEHGEAPVVPRPLLRDR 722


>SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11)
          Length = 406

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = -1

Query: 527 SSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTG--FVVEHDFIMATY 354
           S +RA++   AD+Y++D+P + LD +   V  +V +R I    R     +V HD +    
Sbjct: 206 SLARALY-LDADIYVLDDPLSALDFK---VRRRVFQRCICELLRDKLCILVTHD-LGCIE 260

Query: 353 LADRVIVFEG 324
            AD+V++ EG
Sbjct: 261 KADKVVIMEG 270


>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = -1

Query: 527  SSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTG--FVVEHDFIMATY 354
            S +RA++   AD+Y++D+P + LD +   V  +V +R I    R     +V HD +    
Sbjct: 914  SLARALY-LDADIYVLDDPLSALDFK---VRRRVFQRCICELLRDKLCILVTHD-LGCIE 968

Query: 353  LADRVIVFEG 324
             AD+V++ EG
Sbjct: 969  KADKVVIMEG 978


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -1

Query: 521  SRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADR 342
            +RA+   P  + L+DE ++ LDSE   +  + ++R  L   RT   + H  +     AD 
Sbjct: 1201 ARAILKNPK-ILLLDEATSALDSESEHLVQEALER--LMKGRTVITIAHR-LSTIKNADN 1256

Query: 341  VIVFEG 324
            ++V +G
Sbjct: 1257 IVVLDG 1262


>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 521 SRAVFGKPADVYLIDEPSAYLDSE-QRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLAD 345
           +RAV+   ADVYL+D+P + +DS   + +  KVI       K+T  +V H       +  
Sbjct: 682 ARAVYFN-ADVYLLDDPLSAVDSHVGKHIFDKVIGPRGKLRKKTRVLVTHGISFLPQVDQ 740

Query: 344 RVIVFEGTPSSNAT 303
            V++ +G  S   T
Sbjct: 741 IVVLQDGRVSEVGT 754


>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1184

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 527 SSSRAVFGKPADVYLIDEPSAYLD 456
           S +RAV+ K ADVYL+D+P   LD
Sbjct: 545 SLARAVYAK-ADVYLLDDPLRSLD 567


>SB_23783| Best HMM Match : ABC_tran (HMM E-Value=6.7e-07)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -1

Query: 521 SRAVFGKPADVYLIDEPSAYLDSE-QRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLAD 345
           +RAV+   ADVYL+D+P + +DS   + +  KVI    L   +T  +V H  +      D
Sbjct: 113 ARAVYFN-ADVYLLDDPLSAVDSHVGKHIFDKVIGPNGLLKSKTRILVTHG-VQFLRQVD 170

Query: 344 RVIVFE 327
           +++V +
Sbjct: 171 QIVVLQ 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,658,936
Number of Sequences: 59808
Number of extensions: 458123
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)