Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30900
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   0.83 
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   1.9  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   4.4  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    24   5.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   7.7  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 0.83
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
 Frame = -1

Query: 533  TASSSRAVFG----KPADVYLIDEPSAYLDSEQRLVAAKVIK------RFILHAKRTGFV 384
            T SS   VF     KP+ +Y++DE  A LD +   + A  IK      +FI+ + R+   
Sbjct: 1193 TLSSLALVFALHYYKPSPLYVMDEIDAALDFKNVSIVAHYIKERTKNAQFIIISLRSNMF 1252

Query: 383  VEHDFIMATY 354
               D+++  Y
Sbjct: 1253 ELSDYLVGIY 1262


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 334 TITRSARYVAI-IKSCSTTKPVRLAWRMNLLITLA 435
           T  R+ R   + I  CSTT   RL WR++  +TL+
Sbjct: 157 TFNRNKRTSIVDITFCSTTLSERLNWRVSDALTLS 191


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 326 GTPSSNATAHAPQSLLNGMNKFLE 255
           G P   +++  P  +LNG+ K LE
Sbjct: 501 GKPPGESSSFRPLGMLNGLGKVLE 524


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 557 DFLVHNFFNFHWLHHISE 610
           D L+H+F    WLH + +
Sbjct: 764 DLLIHHFRQLVWLHRVRD 781


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 503  KPADVYLIDEPSAYLD 456
            KPA +Y++DE  A LD
Sbjct: 1103 KPAPLYILDEVDAALD 1118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,190
Number of Sequences: 2352
Number of extensions: 14516
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)