Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30900
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 140 1e-33
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 32 0.51
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 32 0.51
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 31 0.89
Z68760-14|CAA92998.2| 908|Caenorhabditis elegans Hypothetical p... 30 2.1
Z68748-13|CAA92957.2| 908|Caenorhabditis elegans Hypothetical p... 30 2.1
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 30 2.1
U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related... 29 4.7
AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical ... 29 4.7
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 28 6.3
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 140 bits (338), Expect = 1e-33
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = -1
Query: 506 GKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFE 327
GK A +YLIDEPSAYLDSEQRL AAKVIKRFI+HAK+T FVVEHDFIMATYLADRV+VFE
Sbjct: 487 GKTASLYLIDEPSAYLDSEQRLHAAKVIKRFIMHAKKTAFVVEHDFIMATYLADRVVVFE 546
Query: 326 GTPSSNATAHAPQSLLNGMNKFLE 255
G PS TA PQSLL GMN+FL+
Sbjct: 547 GQPSVKCTACKPQSLLEGMNRFLK 570
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/67 (62%), Positives = 55/67 (82%)
Frame = -2
Query: 727 QLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNL 548
+LP + ISYKPQKISPKS+ VR +LHDKI++ Y HPQF TDVM P+ +E+++D+ V+ L
Sbjct: 413 ELPHVSISYKPQKISPKSETTVRFMLHDKIQNMYEHPQFKTDVMNPLMMEQLLDRNVKEL 472
Query: 547 SGGELQR 527
SGGELQR
Sbjct: 473 SGGELQR 479
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/83 (39%), Positives = 45/83 (54%)
Frame = -1
Query: 497 ADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTP 318
ADVY+ DEPS+YLD +QRL AA +I+ + VVEHD + YL+D + G P
Sbjct: 246 ADVYMFDEPSSYLDVKQRLKAAAIIRERVSDTNYV-VVVEHDLAVLDYLSDFICCLYGVP 304
Query: 317 SSNATAHAPQSLLNGMNKFLESW 249
P + G+N FLE +
Sbjct: 305 GVYGVVTLPSGVREGINMFLEGF 327
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = -3
Query: 255 ILGITFRRDPNNFRPRINKHASVKDIEQKRAGQYFFLED 139
+L ITFRRD +RPRINK SVKD++QK++GQ+FFL+D
Sbjct: 571 MLDITFRRDQETYRPRINKLDSVKDVDQKKSGQFFFLDD 609
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 610 LTDVMKPMKIEEIMDQEVQNLSGGELQR 527
L V+ M++ ++D+E+ LSGGELQR
Sbjct: 208 LNSVIDQMELRGLLDREIDQLSGGELQR 235
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = -1
Query: 542 W*VTASSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEH 375
W + + +RA+F KP+ V L+DEP+ +LD E A ++ + KRT VV H
Sbjct: 231 WRMRIALARALFLKPS-VLLLDEPTNHLDLE----ACVWLEEELAQYKRTLLVVSH 281
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 31.9 bits (69), Expect = 0.51
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = -1
Query: 542 W*VTASSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEH 375
W + + +RA+F KP+ V L+DEP+ +LD E A ++ + KRT VV H
Sbjct: 231 WRMRIALARALFLKPS-VLLLDEPTNHLDLE----ACVWLEEELAQYKRTLLVVSH 281
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 31.1 bits (67), Expect = 0.89
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = -1
Query: 542 W*VTASSSRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEH 375
W + +RA+F KP+ V L+DEP+ +LD E A ++ + KRT VV H
Sbjct: 230 WRMRIRLARALFLKPS-VLLLDEPTNHLDLE----ACVWLEEELAQYKRTLLVVSH 280
>Z68760-14|CAA92998.2| 908|Caenorhabditis elegans Hypothetical
protein F36H1.6 protein.
Length = 908
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 326 GTPSSNATAHAPQSLLNGMNKFLESWESPSAG 231
G P +TAH PQ+ L +NK +E E AG
Sbjct: 743 GDPLDRSTAHGPQNHLAHLNKLVEYVEKAVAG 774
>Z68748-13|CAA92957.2| 908|Caenorhabditis elegans Hypothetical
protein F36H1.6 protein.
Length = 908
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 326 GTPSSNATAHAPQSLLNGMNKFLESWESPSAG 231
G P +TAH PQ+ L +NK +E E AG
Sbjct: 743 GDPLDRSTAHGPQNHLAHLNKLVEYVEKAVAG 774
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -1
Query: 527 SSSRAVFGKPADVYLIDEPSAYLDSE-QRLVAAKVIKRFILHAKRTGFVVEHDFIMATYL 351
S +RAV+ + D+YL+D+P + +D+ R + KVI L +T +V H+ Y+
Sbjct: 385 SLARAVY-QDKDIYLLDDPLSAVDAHVGRALFDKVIGPDGLLRSKTRVLVTHNLQYTKYV 443
Query: 350 ADRVIVFE 327
D + V E
Sbjct: 444 -DTIYVIE 450
>U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related
family protein 5 protein.
Length = 961
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -2
Query: 751 YL*SGSSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTDVMKPMKIEEI 572
YL S G+ P ++ IS S G+ R +L D+IRD Y T P + E
Sbjct: 61 YLVGYSVGRYPHAYLIVA-FLISINSLGMYRMVLKDRIRDGY------TPTNAPSRYETD 113
Query: 571 MDQEVQNLSG 542
+ +E N+SG
Sbjct: 114 VLREFYNISG 123
>AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical
protein Y50E8A.16 protein.
Length = 807
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -1
Query: 521 SRAVFGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADR 342
+RA+ P V ++DE ++ LDSE + + + R +RT V+ H + ADR
Sbjct: 699 ARALIRDPR-VLILDEATSALDSESEAMVQEALNR--CARERTVLVIAHR-LSTVRSADR 754
Query: 341 VIVFE 327
+ V E
Sbjct: 755 IAVIE 759
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 319 GVPSNTITRSARYVAIIKSCSTTKPV 396
G+PSN ++R VAI ++CST++P+
Sbjct: 403 GLPSNALSRP-NPVAITQTCSTSQPI 427
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,656
Number of Sequences: 27780
Number of extensions: 351746
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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