Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30900
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 226  RIPAEGDSQDSRNLFIPLRSD*GACAVAFDE 318
            R+P++G    + N+F P   D   CA   D+
Sbjct: 1789 RVPSQGGGSGTHNVFSPEYDDPANCAPEEDQ 1819


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 313 DEGVPSNTITRSARYVAIIKSCSTTKPVRLAWRMN 417
           DEG    + + ++    +IK+ + T P++++WR N
Sbjct: 221 DEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGN 255


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 313 DEGVPSNTITRSARYVAIIKSCSTTKPVRLAWRMN 417
           DEG    + + ++    +IK+ + T P++++WR N
Sbjct: 272 DEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGN 306


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 313 DEGVPSNTITRSARYVAIIKSCSTTKPVRLAWRMN 417
           DEG    + + ++    +IK+ + T P++++WR N
Sbjct: 221 DEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGN 255


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 313 DEGVPSNTITRSARYVAIIKSCSTTKPVRLAWR 411
           DEG    + + ++    +IK+ + T P++++WR
Sbjct: 221 DEGTLRKSPSLTSLNAYLIKNQTITCPIKVSWR 253


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 336 DYSIS*ICCHYKVVLDNKTSAFGMEDESFNYFSCYQTLFRIQVS*RFINKVN 491
           DY IS I   ++ +L   TS FG  D   N  +  Q L+ ++++  +IN  N
Sbjct: 505 DYDISNI--EHEALLLVITSTFGNGDPPENGEAFAQNLYAMKMNETYINSGN 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,405
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)