Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30898
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.18
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.18
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 31 0.24
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 30 0.41
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 29 0.54
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 29 0.54
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.54
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.95
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 28 1.7
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 3.8
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 5.1
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 6.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.7
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 6.7
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 6.7
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 26 6.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.7
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 6.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.9
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 8.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.18
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +1
Query: 238 NSSNELWNARSTKRWKRASPVPLSSSTIKMKPVTLCRSTRTHS-----TSPCTSHAPKPA 402
+SS ++ S+ + A+P SSS + V S+ + S TS S + P+
Sbjct: 183 SSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPS 242
Query: 403 PSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKTVGAS 519
SS S S L+S +T S+ +++I S + +S
Sbjct: 243 TSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSS 281
Score = 28.7 bits (61), Expect = 0.95
Identities = 26/112 (23%), Positives = 50/112 (44%)
Frame = +1
Query: 196 VPAKAIDTCHEDAQNSSNELWNARSTKRWKRASPVPLSSSTIKMKPVTLCRSTRTHSTSP 375
V + + T A S++ + + S+ +SP SSST+ ++ T S+S
Sbjct: 189 VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
Query: 376 CTSHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKTVGASLNAT 531
TS + + SS S S +S I + S+ ++ S T+ +S +++
Sbjct: 249 STSSSLSSSSSSSTASSS---SSSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.1 bits (67), Expect = 0.18
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +1
Query: 214 DTCHEDAQNSSNELWNARSTK-RWKRASPVPLSSSTIKMKP-VTLCRSTRTHSTSPCTSH 387
D H D + S +N S K R SP S K +P + L S HS SP S
Sbjct: 396 DNMHSDVRQDS---FNKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPHSLSP--SQ 450
Query: 388 APKPAPSSGQQSLSPKLTS 444
P PS+ S SP LTS
Sbjct: 451 PPVVVPSNTTISSSPPLTS 469
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 238 NSSNELWNARSTKRWKR---ASPVPLSSSTIKMKPVTLCRSTRTHSTSPCTSHAPKPAPS 408
N+ +LWN R R + SP P+S S ++ H++S +SH + S
Sbjct: 36 NAIRKLWNERRRYRMPKDESISPTPISYSFRSLRRGHTSGHASEHTSSSRSSHDESDSMS 95
Query: 409 SGQQSLSPKLTSQ 447
S +S S ++S+
Sbjct: 96 SSSESDSDSVSSE 108
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 124 KMKNSGIKALLRPLMKMIKKTTKRVPAKAIDTCHEDAQNSSNELWNARSTKRW 282
+M +S K +RP MK ++ + + H +N S L STK W
Sbjct: 746 RMVSSPSKVSIRPKMKSVRLLAREASEARKEIRHNARRNKSGNLLRRSSTKLW 798
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 176 IIFISGRSSALMPLFFIFSALYLFSLIELFVAMIYSLLAYVDMLIMLM 33
++ S ++ FFI A++ F+L +F I+ Y DML+ L+
Sbjct: 215 VVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLV 262
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 29.5 bits (63), Expect = 0.54
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 174 DQEDNETGSRQGDRHVPRGRTELEQRALERKIYEEMEACQSGAAFLVYNQDETCDLVPVN 353
+ E+ + G+ D RGRT + +E +++ C + + N+D+ C + P N
Sbjct: 236 ESENGKVGNTLSDPCSLRGRT-YDIDGIEFAGTGDLKQCLK-LTYNLLNKDKPCSMDPCN 293
Query: 354 KDTFYV-PVHFARTE 395
D + PV FA TE
Sbjct: 294 FDGISIPPVDFANTE 308
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +1
Query: 61 ANNEYIIATNNSINENRYNAEKMKNSGIKALLRPLMKMIKKTTKRVPAKAIDTCHEDAQN 240
A E +ATNN ++E++ + + + N+ + L + +M+ +K+ + ++DT +
Sbjct: 560 AEKEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQ-LKENEQNF--SSLDTSFKKLNE 616
Query: 241 SSNELWNARST 273
S EL N T
Sbjct: 617 SHQELENNHQT 627
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.95
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1
Query: 232 AQNSSNELWNARSTKRWKRASPVPLSSSTIKMKPVTLCRSTRTHSTSPCTSHAPKPAPSS 411
+ +SS+ ++ S+ +S SSS+ P+T S+ S+S +S + + S
Sbjct: 176 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235
Query: 412 GQQSLSPKLTSQRRIA----TPSAKRQNNNIQC-SKTVGASLNATR 534
S ++S I+ TPS+ + + + S T +LNA++
Sbjct: 236 SSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNASK 281
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 394 KPAPSSGQQSLSPKLTSQRRIATPSAKRQNNN 489
+PA S Q SLSPKL+S +T ++NN
Sbjct: 168 QPAALSSQSSLSPKLSSVLPTSTQKRSVRSNN 199
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 310 SSTIKMKPVTLCRSTRTHSTSPCTSHA--PKPAPSSGQQSLSPKLTSQRRIAT 462
+S + +PVT+ + + ++ P SHA PK AP +P Q+ + T
Sbjct: 258 ASELHSRPVTVFQEPQRSASQPYESHALSPKVAPLFDNSQATPIPKRQQDVVT 310
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 5.1
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 139 GIKALLRPLMKMIKKTTKRVPAKAIDTCHEDAQNSSNELWNARSTKRWKRAS----PVPL 306
G + L R L K + T V K I AQ++ +A S R +R S P
Sbjct: 105 GDEMLTRDLKKSNENTV--VHGKIIINLSTTAQSTLQVPSSAASGARTQRTSITNDPQSS 162
Query: 307 SSSTIKMKPVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNN 486
SS++ P + + + SP +AP +P+S + Q P +R+ +
Sbjct: 163 QSSSVSRNPAS------SRAGSPTRDNAPAASPASSEPRTFSSFEDQYGRLPPGWERRTD 216
Query: 487 NI 492
N+
Sbjct: 217 NL 218
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 352 TRTHSTSPCTSHAPKPAPSSGQ 417
TR H+T+PC K PSSG+
Sbjct: 73 TRRHNTAPCDWVIVKLGPSSGR 94
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 295 PVP-LSSSTIKMKPVTLCRSTRTHSTSPCT----SHAPKPAPSSGQQSLSPKLTS 444
PVP + S + P ++ +T ST P + +H P PAP + Q + L+S
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSS 1547
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 37 NIINMSTYANNEYIIATNNSINE-NRYNAEKMKNSGIKALLRPLMKMIKKTTK 192
NI+ + Y YIIATN+ + + RYN + KN + + + + K +K
Sbjct: 870 NIVKAALYEGTVYIIATNSGLLKLLRYNKD-AKNFNDRFICESVYHLHDKVSK 921
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 RSTRTHSTSPCTSHAPKPAPSSGQQSLSP 432
RS T + P + AP PAPS QQ+ P
Sbjct: 18 RSASTAAALPPRTMAPPPAPSRVQQAPPP 46
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 153 TAAAYEDDQEDNETGSRQGDRHVPRGRTELEQRALER-KIYEEMEACQSGAAFLVYNQDE 329
T ++E +ED E+G G VP R++ + AL+ YE + + + Y +
Sbjct: 304 TNDSFEVKREDLESGYSYGRTIVPISRSDEDVLALDTIPGYEILGFIPKSSLPIYYTISD 363
Query: 330 TCDLVPVNKDTFYVPVHFA 386
T +VP KD F ++F+
Sbjct: 364 TNIIVP--KDDFESKLNFS 380
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = +1
Query: 283 KRASPVPLSSSTIKMKPVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIAT 462
+ A P P SST++ V+L S + + S ++ AP A + S + SQ+ T
Sbjct: 503 RAACPYPFLSSTLQPLYVSLGPSIGSRNQSTPSTLAPNVAETDALVSENTGAASQK---T 559
Query: 463 PSAKRQNNNIQCSKTVGASLNATR 534
+ + N++++ V + TR
Sbjct: 560 SKSYKTNDSLKVPPLVPLLIGTTR 583
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 541 PGRVLHSSLHPRSWSTGCCCSAAWHSV*QCAVAKSAS 431
P VL++ +HP S S G CS S C + S
Sbjct: 239 PRIVLYNEIHPDSESIGSVCSQDLKSRPDCLIVAGTS 275
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 331 PVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKT 507
P T ST T SH P P PS+ +++ K Q +P+ NN+ S T
Sbjct: 321 PNTPFNSTATVDVGAAGSHFPYPQPSN-LDAINAKTYFQSSSNSPAPYVYRNNLPPSAT 378
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 460 TPSAKRQNNNIQCSKTVGASLNATRDQDQCL 552
TP+ NN I C T L RD++Q L
Sbjct: 273 TPTLNSPNNGIHCHSTSALDLLFHRDREQRL 303
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 171 DDQEDNETGSRQGDRHVPRGRTELEQRALERKIYEEMEACQSGAAFLVYNQDET 332
D + N G+R+ +Q +R+ Y+E QS A++ + +Q+ET
Sbjct: 200 DPRRKNVVKLSDGERYNSLQEASRKQSERDRRQYQETFKNQSIASWTIIDQEET 253
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 374 GDVECVLVDRHKVTGFILIVDEESGTGLARFHLFV 270
GD V R K T I++ DEE G+AR + V
Sbjct: 74 GDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVV 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,202
Number of Sequences: 5004
Number of extensions: 58942
Number of successful extensions: 270
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -