Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30897
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35) 52 7e-07
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_4956| Best HMM Match : ThiF (HMM E-Value=0) 36 0.039
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_38023| Best HMM Match : YL1 (HMM E-Value=8.3) 30 2.6
SB_4056| Best HMM Match : PSP1 (HMM E-Value=0.79) 30 2.6
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 28 7.8
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 71.3 bits (167), Expect = 8e-13
Identities = 33/82 (40%), Positives = 47/82 (57%)
Frame = +3
Query: 264 LLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFT 443
+LDN + + D SQFL P + +G NRAE SL R + LNPMV V++ + D+F
Sbjct: 1 MLDNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLD 60
Query: 444 EFDVVCATGLKQEQFERINNAC 509
+FDVV ATG + ++ C
Sbjct: 61 DFDVVVATGCSSDILANLDERC 82
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 514 QNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQ--HKATKRGPDDEEKNAR 657
+N KF DV+G YGYMF+DL Y EE + H A K+ + +K +
Sbjct: 85 KNIKFFASDVFGFYGYMFADLGKDRYVEEERKTIHSAEKKEKEPAKKKQK 134
>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
Length = 1026
Score = 51.6 bits (118), Expect = 7e-07
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = +1
Query: 73 QKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
Q + + E + + Y RQ+ + G ++ K++ + VLI GL GLG EIAKNV+L GV
Sbjct: 42 QSVRDEGQAEKMDIDEGLYSRQLYVLGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGV 101
Query: 253 K 255
K
Sbjct: 102 K 102
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/86 (34%), Positives = 43/86 (50%)
Frame = +3
Query: 252 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPD 431
KSV L D ++ DL SQF +G NRAE S R LN V ++ +T+ +L +
Sbjct: 102 KSVTLHDTGAVELSDLTSQFFLNKKDVGKNRAEVSHPRIAELNTYVSMSVNTQ---KLTE 158
Query: 432 SFFTEFDVVCATGLKQEQFERINNAC 509
F +F VV T E+ I++ C
Sbjct: 159 EFINKFQVVVLTESSLEEQLWISDFC 184
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 124 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
+YD QI ++G + QK+L K ++G +G E KN + G+
Sbjct: 324 RYDGQIAVFGSEFQKKLGQQKYFVVGAGAIGCEHLKNFAMMGL 366
>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 91 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
N+VE+ ++ Y RQ + G + +++ A V + G+ GLG EIAKN+ L G+K
Sbjct: 3 NKVEIDDS---LYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIK 54
Score = 36.3 bits (80), Expect = 0.030
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 252 KSVCLLDNEKLKQIDLYSQFLCPPDKI--GVNRAEGSLERARGLNPMVDVTSHTKGVDE 422
KS+ L D DL SQF D + NRA S R LNP V V + T +DE
Sbjct: 54 KSITLHDTRAASMADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHTQTDALDE 112
>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
Length = 213
Score = 35.9 bits (79), Expect = 0.039
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 169 RLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
++ +K+L++G G+G E+ KN++LTG K
Sbjct: 20 KVNNSKILVVGAGGIGCELLKNLVLTGFK 48
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 252 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGV--DEL 425
K++ L+D + + +L QFL +G ++A+ + E A NP + + + E
Sbjct: 48 KNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKAKVARESALRFNPDAKIVAIHDNITSPEY 107
Query: 426 PDSFFTEFDVVCATGLKQEQFERINNAC 509
+F +FDVV + +N C
Sbjct: 108 GIDYFKQFDVVMNALDNRAARNHVNRMC 135
>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 35.9 bits (79), Expect = 0.039
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 169 RLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
++ +K+L++G G+G E+ KN++LTG K
Sbjct: 20 KVNNSKILVVGAGGIGCELLKNLVLTGFK 48
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 252 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGV--DEL 425
K++ L+D + + +L QFL +G ++A+ + E A NP + + + E
Sbjct: 48 KNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKAKVARESALRFNPDAKIVAIHDNITSPEY 107
Query: 426 PDSFFTEFDVVCATGLKQEQFERINNAC 509
+F +FDVV + +N C
Sbjct: 108 GIDYFKQFDVVMNALDNRAARNHVNRMC 135
>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
L+ +E +Y RQ+ L G+ Q+ L+++ VL++G GLG A + G+
Sbjct: 52 LTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGI 103
>SB_38023| Best HMM Match : YL1 (HMM E-Value=8.3)
Length = 346
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 514 QNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVF 669
QN K VW T + + + + +V++ A KRG D+E +++VF
Sbjct: 167 QNPKRFFTLVWDTKIEILNVTFERDREAIVVEYVAAKRGSDEEPSERKDSVF 218
>SB_4056| Best HMM Match : PSP1 (HMM E-Value=0.79)
Length = 176
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 514 QNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVF 669
QN K VW T + + + + +V++ A KRG D+E +++VF
Sbjct: 20 QNPKRFFTLVWDTKIEILNVTFERDREAIVVEYVAAKRGSDEEPSERKDSVF 71
>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 460 VQQVSNKSNSNESTMLARQNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQ 609
+ ++ K NSN + A NKK W +G MF L D + + I+Q
Sbjct: 1 IVELDRKRNSNREALSAL-NKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQ 49
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 135 TNPPVGLRLAEETTCSQSINHRLVR 209
TNP + R E TTC Q +N LV+
Sbjct: 769 TNPELQARFEEWTTCKQYVNQDLVK 793
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,664,784
Number of Sequences: 59808
Number of extensions: 507147
Number of successful extensions: 2244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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