Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30897
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical pr...    65   5e-11
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    48   1e-05
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    48   1e-05
U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    45   7e-05
AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...    37   0.020
U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membran...    34   0.11 
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a prot...    29   4.0  
AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical ...    28   6.9  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z72502-6|CAA96591.1|  343|Caenorhabditis elegans Hypothetical
           protein C08B6.9 protein.
          Length = 343

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 30/52 (57%), Positives = 41/52 (78%)
 Frame = +1

Query: 97  VELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
           +E+S+AE   YDRQIRLWG+++Q ++R +KVLIIG   LGAE+AK + L GV
Sbjct: 1   MEVSKAEQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGV 52


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/58 (48%), Positives = 33/58 (56%)
 Frame = +1

Query: 82  VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
           VG N  EL +     Y RQI   G  +   LR A VLI GL  +G EIAKN+IL GV+
Sbjct: 10  VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVR 65



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 100 ELSEAEAE----QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
           +LSE + +    +YD Q  ++G   Q+ L   +  ++G   +G E+ KN+ + GV
Sbjct: 402 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGV 456


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/58 (48%), Positives = 33/58 (56%)
 Frame = +1

Query: 82  VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
           VG N  EL +     Y RQI   G  +   LR A VLI GL  +G EIAKN+IL GV+
Sbjct: 95  VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKNLILGGVR 150



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 100 ELSEAEAE----QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
           +LSE + +    +YD Q  ++G   Q+ L   +  ++G   +G E+ KN+ + GV
Sbjct: 487 KLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVGAGAIGCELLKNLSMMGV 541


>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +1

Query: 124 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
           +YDRQ+RLWG + Q  + +    ++G   L  EI K+++L GV+
Sbjct: 9   RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQ 52



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 252 KSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDEL-- 425
           +S  ++D+ K++Q D+   F    D IG +RAE +LE+   LNP V  ++ ++    L  
Sbjct: 52  QSFYVVDDAKVEQADIGQNFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAM 111

Query: 426 -PDSFFTEFDVVCATGLKQE 482
                 T F VV A    +E
Sbjct: 112 EDVEKLTTFSVVVAANQNEE 131


>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +1

Query: 103 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 252
           +S+ +A +Y RQ+ +  +G+  QK L+   VLI+G  GLG  +A  +   G+
Sbjct: 10  ISKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGI 61


>U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membrane
           ruffles in embryoprotein 1 protein.
          Length = 430

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 151 GLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
           G ++ + L+  K+L+IG  GLG E+ KN+ L+G +
Sbjct: 33  GPENFEALQNTKILVIGAGGLGCELLKNLALSGFR 67


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 157 DSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVK 255
           +  +++  +K+L+IG  G+G E+ KN+ +TG +
Sbjct: 6   EKHEKIVQSKILVIGAGGIGCELLKNLAVTGFR 38


>AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical
           protein Y67H2A.7 protein.
          Length = 692

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 556 GYMFSDLVDHEYSEEIVQHKATKRGPDDE-EKNARETVFYNSKTSSY-ICPASECFIS*L 729
           G M +  + H+   + + H   +R PD   +     TV Y +K  SY +  AS C I   
Sbjct: 572 GRMTTTELFHDIMNKTMPH--IQRSPDSAFQHRFHHTVQYGAKYYSYLVARASACLIWQQ 629

Query: 730 EFTRDAF*ATSGDC 771
            F  D F    GDC
Sbjct: 630 RFLNDPFSRKWGDC 643


>AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a protein
           protein 222 protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 553 YGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVFYNSKTSSYICPASECFIS 723
           +G  FS  V  E  +E+++   T + P+       +TVF+N    S I P   CF S
Sbjct: 182 FGVTFSSAVGEEARQEVIETVGTLKWPN------LKTVFFNGIHQSEIKPMITCFNS 232


>AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.16 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 436 SSRNLTSYVQQVSNKSNSNESTMLARQNKKFICGDVWGTYGYMFSDLV 579
           S  NLT++ +   NK +S +S + A + KKF+C      Y + F++++
Sbjct: 51  SKFNLTNHTK---NKRDSMKSLIKALKTKKFVCATKIYFYQFRFNEIL 95


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 439 SRNLTSYVQQVSNKSNSNESTMLARQNKKFICGDVWGTYGYMFSDLVDHEY-SEEIVQHK 615
           S  + SY+Q  S+KSN+  S    +++KK+  G+   ++      +   EY + E +   
Sbjct: 117 SNLIVSYLQDNSDKSNAGYSIRYNKEDKKYTIGNKDVSFNQNIIKIDSDEYDATEGLMEL 176

Query: 616 ATKRGPDDEEKNARETVFY 672
             K+ P+  +    +T  Y
Sbjct: 177 LIKKSPNVNKIQKDDTSNY 195


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
          protein AC3.8 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 92 LFPTIFCNAVIYNFNKFSTIFGYN 21
          LF  ++CN + YN+   + +FGY+
Sbjct: 9  LFFALYCNVLAYNYLVVAPVFGYS 32


>U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical
           protein C04E6.4 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 608 CTISSEYS*STRSENM*PYVPQTSPQI 528
           CT+ + Y  + RS NM  YVPQ S  +
Sbjct: 131 CTLDALYKNAMRSSNMLQYVPQKSHNV 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,381,327
Number of Sequences: 27780
Number of extensions: 384188
Number of successful extensions: 1147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)