Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30897
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.83 
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   4.4  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   7.8  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 454 SYVQQVSNKSNSNESTMLARQNKK 525
           +Y    SN SNS+ S +L +QNK+
Sbjct: 141 NYFYSKSNGSNSSNSDVLFKQNKE 164


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 246 RCKSVCLLDNEKLKQI 293
           + KSVC LD  KL Q+
Sbjct: 80  KVKSVCTLDGNKLIQV 95


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 7   CLILRLYPNIVLNLLKL*ITALQKMVGN 90
           C++ R Y +  L  +K     L+K+ GN
Sbjct: 109 CMVARKYIDCALEKMKFLDDELEKIAGN 136


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 7   CLILRLYPNIVLNLLKL*ITALQKMVGN 90
           C++ R Y +  L  +K     L+K+ GN
Sbjct: 109 CMVARKYIDCALEKMKFLDDELEKIAGN 136


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 379 FKPRALSNEPSARFTPILSGGHRNWEYR 296
           F+PRA  +    R+    S  + NWE++
Sbjct: 166 FEPRATDSRHYDRYKEEESNENYNWEHK 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,503
Number of Sequences: 438
Number of extensions: 4644
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)