Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30896
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 223 PPLLYSILNPETNSLSPS 170
           PP+   I+NP+    SPS
Sbjct: 410 PPMQSQIINPQPQITSPS 427


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 419 FFKLNILTYHNDNEVKYH 366
           F+K+N   YH D    +H
Sbjct: 434 FYKMNHPVYHKDPHYGFH 451


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 LDLILNIEEGDLL*FFWLNIQYFI 264
           LDL+LN E G  L  F  N ++++
Sbjct: 156 LDLVLNSESGGDLSDFITNGEWYL 179


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 LDLILNIEEGDLL*FFWLNIQYFI 264
           LDL+LN E G  L  F  N ++++
Sbjct: 156 LDLVLNSESGGDLSDFITNGEWYL 179


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 LDLILNIEEGDLL*FFWLNIQYFI 264
           LDL+LN E G  L  F  N ++++
Sbjct: 156 LDLVLNSESGGDLSDFITNGEWYL 179


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 LDLILNIEEGDLL*FFWLNIQYFI 264
           LDL+LN E G  L  F  N ++++
Sbjct: 156 LDLVLNSESGGDLSDFITNGEWYL 179


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 193 LDLILNIEEGDLL*FFWLNIQYFI 264
           LDL+LN E G  L  F  N ++++
Sbjct: 156 LDLVLNSESGGDLSDFITNGEWYL 179


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 320 FYLKLRLISFLFI*VRGTLPRYRYDKLIY 406
           FY     I  +F   + TLPRY  ++L Y
Sbjct: 399 FYRWHSYIDDIFQEYKATLPRYTENQLNY 427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,877
Number of Sequences: 336
Number of extensions: 862
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)