Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30896
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.5  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   7.2  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   7.2  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   7.2  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   7.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   7.2  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   7.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   7.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   7.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.2  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 220 PLLYSILNPETNSLSPSAKSKGVR 149
           P++YSI N E         +KG R
Sbjct: 322 PIIYSIFNTEFREAFKRILTKGAR 345


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 219 LFYIQY*IQKLTLFHLQQNQKEFDLF 142
           L+Y Q   +   LF L  + K+FD+F
Sbjct: 99  LYYPQLLREMSALFKLFYHAKDFDIF 124


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 219 LFYIQY*IQKLTLFHLQQNQKEFDLF 142
           L+Y Q   +   LF L  + K+FD+F
Sbjct: 99  LYYPQLLREMSALFKLFYHAKDFDIF 124


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 263 FIRMILVIINMGGYNL 310
           FIR++LVI+   GY L
Sbjct: 54  FIRIVLVILLRAGYVL 69


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 244 LNIQYFIYKND 276
           LN+ YFI KND
Sbjct: 79  LNVLYFINKND 89


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 49  LYKNEREYRKYG 60


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 49  LYKNEREYRKYG 60


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 49  LYKNEREYRKYG 60


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 49  LYKNEREYRKYG 60


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 282 LYKNEREYRKYG 293


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 282 LYKNEREYRKYG 293


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 282 LYKNEREYRKYG 293


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 282 LYKNEREYRKYG 293


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 282 LYKNEREYRKYG 293


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 262 IYKNDFSYYKYG 297
           +YKN+  Y KYG
Sbjct: 271 LYKNEREYRKYG 282


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 265 YKNDFSYYKYGR 300
           YKN+  Y KYG+
Sbjct: 272 YKNEREYRKYGK 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,138
Number of Sequences: 438
Number of extensions: 1140
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)