Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30896
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18510.1 68414.m02310 hypothetical protein                          28   3.1  
At1g31130.1 68414.m03809 expressed protein                             27   9.4  

>At1g18510.1 68414.m02310 hypothetical protein
          Length = 238

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 248 IFSILFIRMILVIINMGGYNLRFFFY 325
           +F+I    MI V I +GGY+L+ F Y
Sbjct: 60  MFTIYIYAMIFVSIVLGGYSLKCFIY 85


>At1g31130.1 68414.m03809 expressed protein
          Length = 321

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 248 IFSILFIRMILVIINMGGYNLRFFFYLKLRLIS 346
           +F  LFI  + V + M  YN  FF +L + L++
Sbjct: 125 VFKRLFITFLWVALLMFAYNAVFFVFLVMLLVA 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,630,351
Number of Sequences: 28952
Number of extensions: 63235
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)