Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30895
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    80   3e-16
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    79   7e-16
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.1  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.8  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   4.9  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = +2

Query: 266 HENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPH 445
           H  T+++K+EG   + +A FY GK   YVY++ K        RG  +K+R IWG + RPH
Sbjct: 25  HPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV------RG--SKIRVIWGTIARPH 76

Query: 446 GNSGSVRAKFKSNLPAQAMG 505
           GNSG+VRA+F  NLPA+  G
Sbjct: 77  GNSGAVRARFVHNLPAKTFG 96


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = +2

Query: 266 HENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPH 445
           H  T+L+K+EG   + +A FY GK   +VY++ K  P+ G      +K+R IWG V+RPH
Sbjct: 25  HPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--PVRG------SKIRVIWGTVSRPH 76

Query: 446 GNSGSVRAKFKSNLPAQAMG 505
           GNSG VRA+F  NLP +  G
Sbjct: 77  GNSGVVRARFTHNLPPKTFG 96


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 433 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 329
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 251 WLRNQHENTALLKVEGAKDRNDAVF--YAGKHCVY 349
           WLR + +N+ LLK   + D N+ +F  Y+   CVY
Sbjct: 60  WLRKKIKNSVLLKT--SFDSNETIFFLYSLHRCVY 92


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 456 AVSEPSSSLTSLPRLWDTNTSDAVS 530
           A++ P+SS++SLP L  + T+D+ S
Sbjct: 302 ALNSPASSVSSLPSLGASQTTDSSS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,421
Number of Sequences: 5004
Number of extensions: 42452
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)