Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30895
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 95 5e-20
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 92 3e-19
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 90 1e-18
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 31 0.93
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741... 30 1.6
12_01_0899 - 8689125-8689383,8689540-8689826 29 3.7
09_04_0201 + 15543318-15543488,15543956-15544069 29 3.7
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 3.7
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 28 5.0
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 5.0
04_01_0053 + 551027-553024 28 5.0
10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922... 28 6.5
12_02_0971 + 24949137-24950534 27 8.7
04_04_1576 - 34551095-34552645 27 8.7
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 27 8.7
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 94.7 bits (225), Expect = 5e-20
Identities = 45/84 (53%), Positives = 58/84 (69%)
Frame = +2
Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
NQ+ENT+L+++EG + + +Y GK YVY+AK ++ GG T R IWGKVTR
Sbjct: 27 NQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTR 78
Query: 440 PHGNSGSVRAKFKSNLPAQAMGHE 511
PHGNSG VRAKFKSNLP +MG +
Sbjct: 79 PHGNSGVVRAKFKSNLPPASMGRK 102
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/82 (52%), Positives = 57/82 (69%)
Frame = +2
Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
NQ+ENT+LL++EG + + +YAGK YVY+AK ++ + +R IWGKVTR
Sbjct: 26 NQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTR 77
Query: 440 PHGNSGSVRAKFKSNLPAQAMG 505
PHGNSG VRAKF+SNLP +MG
Sbjct: 78 PHGNSGVVRAKFRSNLPPTSMG 99
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/81 (51%), Positives = 56/81 (69%)
Frame = +2
Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
NQ+ENT+LL++EG + + +YAGK YVY+AK ++ + +R IWGKVTR
Sbjct: 26 NQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS--------NDSTIRCIWGKVTR 77
Query: 440 PHGNSGSVRAKFKSNLPAQAM 502
PHGNSG VRAKF+SNLP +M
Sbjct: 78 PHGNSGVVRAKFRSNLPPTSM 98
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 312 LRSFAPSTLRRAVFSCWLRNHAYIL*IRPLRTACRGGALMLCE-GPLWAPQELLE 151
L +L+ ++ L+ H++ +RP+R C G L E G L +PQEL++
Sbjct: 493 LEELVEKSLQLFRWTSMLQKHSFHATVRPIRIQCSEGVEKLYELGVLQSPQELVQ 547
>02_02_0498 -
10973243-10973345,10973850-10973882,10974104-10974166,
10975934-10976004,10976703-10976789,10976870-10976983,
10977395-10977508,10977784-10977844,10978608-10978923,
10979031-10979721,10979948-10980073,10980180-10980247,
10980314-10980449,10981109-10981238,10981266-10981382,
10981614-10981763,10982158-10982266,10982584-10982701,
10984143-10984168,10984219-10984256,10986267-10986373
Length = 925
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 471 SSSLTSLPRLWDTNTSDAVSFQDLR 545
S SL RLWD TSD + QD R
Sbjct: 278 SGSLDQEVRLWDAKTSDCIGSQDFR 302
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 459 LPELPCGRVTLPQIARSLVFLPRGPP 382
LPE PC R+ LP+ + LP PP
Sbjct: 35 LPEPPCARLLLPEPPWGMAALPPEPP 60
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 441 GRVTLPQIARSLVFLPRGPPGIGVLFL 361
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 406 GFFATGTSGNWCPLLSSVHIDAMLA 332
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 537 PGRIQHHSYSCPIAWAGRLDLNLARTLPELPCGRV 433
PGR+ S P+ WA LDL LAR P + RV
Sbjct: 210 PGRV----VSPPLMWAEALDLLLARLAPRVDYARV 240
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 393 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTNT 515
+A +P+CVL G + T + ++ SSS+ RLWDT T
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTT 1272
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -2
Query: 448 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 359
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>10_07_0012 -
11791524-11791957,11792014-11792108,11792163-11792226,
11792327-11792591,11792670-11793127,11793271-11793592
Length = 545
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 297 PSTLRRAVFSCWLRNHAYIL*IRPLRTACRGGALMLCEGPLWAPQELLEQPWPLFL 130
P T+ R L+NH+ L I R L+LC + PQE E W F+
Sbjct: 122 PKTIHRLCRWLILKNHSEALNILYARDDRIESELLLCVNQTYTPQE-FENAWSWFI 176
>12_02_0971 + 24949137-24950534
Length = 465
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -2
Query: 523 ASLVFVSHSLGREV---RLELGSDTARVAMWAGHLAP 422
A V VS S R + R E G+D AR+A+ AGH P
Sbjct: 354 AGRVVVSGSADRTISVWRREEGADHARLAVLAGHTGP 390
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 359 LCTHRRNACQHKRLHHYGLLLL 294
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +3
Query: 279 LSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFPEVPVAKKPSCVLSGAR*PAHMATLA 458
LSS ++ + M S M + S+C+ G++ +A P C A L
Sbjct: 402 LSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQ 461
Query: 459 VSEPSSSLTSLPRLWD 506
+ PSS+ R D
Sbjct: 462 IGTPSSARPPFDRAQD 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,483
Number of Sequences: 37544
Number of extensions: 340099
Number of successful extensions: 906
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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