Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30895
         (602 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a ...   118   2e-26
BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.      118   2e-26
BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a ...   118   2e-26
BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a ...   118   2e-26
AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting ...   118   2e-26
X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for ...   115   1e-25
AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a ...    97   3e-20
X94619-1|CAA64325.1|   21|Homo sapiens ribosomal protein L35a pr...    30   5.4  
BC122872-1|AAI22873.1|  143|Homo sapiens FLJ42957 protein protein.     30   5.4  
BC121822-1|AAI21823.1|  143|Homo sapiens FLJ42957 protein protein.     30   5.4  
AK126039-1|BAC86408.1|  214|Homo sapiens protein ( Homo sapiens ...    30   5.4  
AK124947-1|BAC86003.1|  143|Homo sapiens protein ( Homo sapiens ...    30   5.4  
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.                 30   7.2  

>BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  118 bits (283), Expect = 2e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           LRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKV
Sbjct: 18  LRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKV 74

Query: 434 TRPHGNSGSVRAKFKSNLPAQAMGH 508
           TR HGNSG VRAKF+SNLPA+A+GH
Sbjct: 75  TRAHGNSGMVRAKFRSNLPAKAIGH 99



 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.
          Length = 110

 Score =  118 bits (283), Expect = 2e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           LRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKV
Sbjct: 18  LRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKV 74

Query: 434 TRPHGNSGSVRAKFKSNLPAQAMGH 508
           TR HGNSG VRAKF+SNLPA+A+GH
Sbjct: 75  TRAHGNSGMVRAKFRSNLPAKAIGH 99



 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  118 bits (283), Expect = 2e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           LRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKV
Sbjct: 18  LRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKV 74

Query: 434 TRPHGNSGSVRAKFKSNLPAQAMGH 508
           TR HGNSG VRAKF+SNLPA+A+GH
Sbjct: 75  TRAHGNSGMVRAKFRSNLPAKAIGH 99



 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  118 bits (283), Expect = 2e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           LRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKV
Sbjct: 18  LRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKV 74

Query: 434 TRPHGNSGSVRAKFKSNLPAQAMGH 508
           TR HGNSG VRAKF+SNLPA+A+GH
Sbjct: 75  TRAHGNSGMVRAKFRSNLPAKAIGH 99



 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting
           protein 33 protein.
          Length = 110

 Score =  118 bits (283), Expect = 2e-26
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           LRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKV
Sbjct: 18  LRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKV 74

Query: 434 TRPHGNSGSVRAKFKSNLPAQAMGH 508
           TR HGNSG VRAKF+SNLPA+A+GH
Sbjct: 75  TRAHGNSGMVRAKFRSNLPAKAIGH 99



 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for
           ribosomal protein L35a. ).
          Length = 110

 Score =  115 bits (276), Expect = 1e-25
 Identities = 54/85 (63%), Positives = 62/85 (72%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           LRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PGG   K  K R IWGKV
Sbjct: 18  LRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG---KPNKTRVIWGKV 74

Query: 434 TRPHGNSGSVRAKFKSNLPAQAMGH 508
           TR HGNSG V AKF+SNLPA+A+GH
Sbjct: 75  TRAHGNSGMVLAKFRSNLPAKAIGH 99



 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a
           pseudogene 3 protein.
          Length = 96

 Score = 97.5 bits (232), Expect = 3e-20
 Identities = 48/82 (58%), Positives = 56/82 (68%)
 Frame = +2

Query: 254 LRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 433
           L+NQ E+TALLK+EG   +++  FY GK C  VY+AK  T IPG    K  K R IWGKV
Sbjct: 17  LQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG---SKPNKSRVIWGKV 73

Query: 434 TRPHGNSGSVRAKFKSNLPAQA 499
           TR H NSG V AKF SNLPA+A
Sbjct: 74  TRAHRNSGMVAAKFHSNLPAKA 95


>X94619-1|CAA64325.1|   21|Homo sapiens ribosomal protein L35a
           protein.
          Length = 21

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 GRLYAKAVFTGYKRG 254
           GRL++KA+F GYKRG
Sbjct: 3   GRLWSKAIFAGYKRG 17


>BC122872-1|AAI22873.1|  143|Homo sapiens FLJ42957 protein protein.
          Length = 143

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 248 AWLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 391
           AWLR+++     + +  A    D     G HCV  +  K R  IPG P
Sbjct: 29  AWLRSRYSKALFMVLRRAAQEKDKGVCQGWHCVKKWACKGR--IPGQP 74


>BC121822-1|AAI21823.1|  143|Homo sapiens FLJ42957 protein protein.
          Length = 143

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 248 AWLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 391
           AWLR+++     + +  A    D     G HCV  +  K R  IPG P
Sbjct: 29  AWLRSRYSKALFMVLRRAAQEKDKGVCQGWHCVKKWACKGR--IPGQP 74


>AK126039-1|BAC86408.1|  214|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44051 fis, clone TESTI4033433. ).
          Length = 214

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 461 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQ 330
           HC  C  GG P P+ H AW      +    S +    HRR+ CQ
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQ 178


>AK124947-1|BAC86003.1|  143|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42957 fis, clone BRSTN2010500. ).
          Length = 143

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 248 AWLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 391
           AWLR+++     + +  A    D     G HCV  +  K R  IPG P
Sbjct: 29  AWLRSRYSKALFMVLRRAAQEKDKGVCQGWHCVKKWACKGR--IPGQP 74


>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
          Length = 1618

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 436  GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 350
            G   PDST LGF+  + TS  W PL S  H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,949,131
Number of Sequences: 237096
Number of extensions: 1968372
Number of successful extensions: 13268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13261
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)