Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30895
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    83   1e-16
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    83   1e-16
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    82   2e-16
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    82   3e-16
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    31   0.78 
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    29   1.8  
At3g01080.1 68416.m00011 WRKY family transcription factor simila...    29   2.4  
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    27   7.2  
At5g51195.1 68418.m06348 hypothetical protein                          27   9.6  
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    27   9.6  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 39/82 (47%), Positives = 53/82 (64%)
 Frame = +2

Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
           NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +           +  R IWGKVTR
Sbjct: 27  NQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTR 78

Query: 440 PHGNSGSVRAKFKSNLPAQAMG 505
           PHGNSG VRAKF SNLP ++MG
Sbjct: 79  PHGNSGVVRAKFTSNLPPKSMG 100


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 40/82 (48%), Positives = 52/82 (63%)
 Frame = +2

Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
           NQ+ NT+L++VEG     +  +Y GK   Y+Y+AK +           +  R IWGKVTR
Sbjct: 27  NQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK--------NGSHYRCIWGKVTR 78

Query: 440 PHGNSGSVRAKFKSNLPAQAMG 505
           PHGNSG VRAKF SNLP ++MG
Sbjct: 79  PHGNSGVVRAKFTSNLPPKSMG 100


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/82 (46%), Positives = 53/82 (64%)
 Frame = +2

Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
           NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +           +  R IWGKVTR
Sbjct: 26  NQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTR 77

Query: 440 PHGNSGSVRAKFKSNLPAQAMG 505
           PHGNSG VR+KF SNLP ++MG
Sbjct: 78  PHGNSGVVRSKFTSNLPPKSMG 99


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/82 (46%), Positives = 53/82 (64%)
 Frame = +2

Query: 260 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTR 439
           NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +           +  R IWGKVTR
Sbjct: 26  NQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK--------NGSHYRCIWGKVTR 77

Query: 440 PHGNSGSVRAKFKSNLPAQAMG 505
           PHGNSG VR+KF SNLP ++MG
Sbjct: 78  PHGNSGVVRSKFTSNLPPKSMG 99


>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -2

Query: 544 LRSWKDTASLVF---VSHSLGR-EVRLELGSDTARVAMWAGHLAPDSTQ--LGFFATGT 386
           +R WKD   + +   V   LG+ E R++L SD+ +   +  H+APD +    G+F   T
Sbjct: 178 IRQWKDLPMVAYERAVWFKLGQNEERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLENT 236


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 293 EGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAK 472
           EG K+R   VF+   H   +++ +    +    +G   +   +W K+   +G++  + A 
Sbjct: 508 EGLKERELCVFFRNNHFCTMFKYEGELYLLATDQGYLNQPDLVWEKLNEVNGDTAFMTAT 567

Query: 473 FK 478
           FK
Sbjct: 568 FK 569


>At3g01080.1 68416.m00011 WRKY family transcription factor similar
           to NtWRKY1 transcription factor GB:BAA82107 from
           [Nicotiana tabacum]
          Length = 423

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 154 QQLLWSPQR--SFAKHQSPATAGCTQRPYSQDISVVTQPAREHRSPQG 291
           QQ    PQR  +F  H  P+T+       S D+S V Q AR H +  G
Sbjct: 102 QQSQPQPQRPDTFPHHMPPSTSVAVHGRQSLDVSQVDQRARNHYNNPG 149


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 466 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 371
           SDT  ++   G L   S ++ FF + TSG +C
Sbjct: 45  SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76


>At5g51195.1 68418.m06348 hypothetical protein
          Length = 267

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 487 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 371
           E++ E+ S+      W      D T   FFA+  SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 499 SLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 356
           +LGRE  L +G D        G + P+ST+L + A+ ++   C  ++S
Sbjct: 313 ALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,811
Number of Sequences: 28952
Number of extensions: 247421
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)