Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30892
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 80 1e-15
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 79 1e-15
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 78 3e-15
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 76 1e-14
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 75 3e-14
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 73 9e-14
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 70 8e-13
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 50 7e-07
01_01_0870 - 6789903-6792251 29 1.9
04_04_1588 - 34633057-34633824 28 3.3
09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040 27 5.7
01_01_0869 + 6786136-6788577 27 7.5
07_03_0258 - 15907667-15907909,15909015-15909081,15910218-15910237 27 10.0
03_06_0767 + 36126254-36126264,36126676-36126769,36127068-361273... 27 10.0
02_04_0319 - 22006550-22006952,22007260-22007441,22007522-220077... 27 10.0
01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496 27 10.0
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 79.8 bits (188), Expect = 1e-15
Identities = 37/44 (84%), Positives = 39/44 (88%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 133
AFDDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 204 AFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 133
AFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 209 AFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 78.2 bits (184), Expect = 3e-15
Identities = 38/48 (79%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 142
AFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE E
Sbjct: 199 AFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 133
AFD+AI+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 182 AFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 74.9 bits (176), Expect = 3e-14
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 133
AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 205 AFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 73.3 bits (172), Expect = 9e-14
Identities = 33/37 (89%), Positives = 37/37 (100%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 112
AFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 423 AFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 151
AFD+A+AEL +L+E++YKDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 189 AFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 50.4 bits (115), Expect = 7e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 2 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 121
A D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 178 ALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>01_01_0870 - 6789903-6792251
Length = 782
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 237 VWRGIIPKPTRAVACKNVKSRSQRTFPFRLKLNVVSSL 350
V+RG +P T VA KN+K Q FR ++ V +
Sbjct: 487 VFRGTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMI 524
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 190 KCVCWGECGEILVVAALGRLVAIALSV*RPK 98
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
Length = 339
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 187 CV-CWGECGEILVVAALGRLVAIALSV*RPK 98
CV CW C L+VAAL A AL + +PK
Sbjct: 22 CVLCWCCCFLFLIVAALAGAAAYALFLYKPK 52
>01_01_0869 + 6786136-6788577
Length = 813
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 237 VWRGIIPKPTRAVACKNVKSRSQRTFPFRLKLNVVSSL 350
V+RG +P T VA KN+K FR ++ V +
Sbjct: 521 VFRGTLPGSTTVVAVKNLKGLGYAEKQFRAEVQTVGMI 558
>07_03_0258 - 15907667-15907909,15909015-15909081,15910218-15910237
Length = 109
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 17 IAELDTLNEDSYKDSTLIMQL-LRDNLTLWTSDTQGDGDEPAEGG 148
I +LD L + + I +L LR L W D GDGDE GG
Sbjct: 8 IIQLDKLLVRTIDSTQAIFELKLRLGLGSWDGD--GDGDEKVSGG 50
>03_06_0767 +
36126254-36126264,36126676-36126769,36127068-36127315,
36127391-36127647,36127949-36127998,36128056-36128286,
36128851-36128928,36129315-36129441,36129520-36129629,
36130003-36130152,36131106-36131183,36131293-36131421,
36131502-36131699,36132199-36132342
Length = 634
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 208 INTDENKCVCWGECGE 161
++T+E C+CW E GE
Sbjct: 522 VHTNEVNCICWDEKGE 537
>02_04_0319 -
22006550-22006952,22007260-22007441,22007522-22007704,
22008144-22008242,22008999-22009115,22010476-22010739
Length = 415
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 210 RKRVTFENVVWRGIIPKPTRAVACKNVKSRSQRTFPFRLKLNVVSSLT 353
R VT + ++GI+ T+ + C + ++ + F + + SSLT
Sbjct: 210 RPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSIDVEQNSSLT 257
>01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496
Length = 582
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +3
Query: 114 LKAMATSLPRAATT------NISPHS-PQHTHLFSSVFIRKRVTFENVVWRGIIPKPTRA 272
L+ AT PR TT N++P + P H HL + R R + ++G + K A
Sbjct: 441 LEDPATETPRPGTTEVWEVINLTPDNHPLHLHLATFQATRVRGLVDEDAFKGCMAKLNDA 500
Query: 273 VAC 281
V C
Sbjct: 501 VRC 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,861,740
Number of Sequences: 37544
Number of extensions: 178191
Number of successful extensions: 519
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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