Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30892
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   3e-15
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      71   5e-13
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   0.48 
SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)                 29   2.5  
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 37/45 (82%), Positives = 41/45 (91%), Gaps = 1/45 (2%)
 Frame = +2

Query: 2   AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 133
           AFDDAIAELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 265 AFDDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309



 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 36/52 (69%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
 Frame = +2

Query: 2   AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 151
           AFDDAIAELDTL+ED YKDSTLIMQLLRDNLT+     Q   +  E AE GD
Sbjct: 176 AFDDAIAELDTLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = +2

Query: 2   AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 133
           AFDDAIA LD L ++SYKDSTLIMQLLRDNLTLWTS+   +G +
Sbjct: 203 AFDDAIAVLDNLKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 8   DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 145
           DD   + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
          Length = 1144

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +3

Query: 153 TNISPHSPQHTHLFSSVFIRKRVTFENVVWRGIIPKPTRAVACKNVKSRSQRTFPFRLKL 332
           T  SP++ +H H       ++ +  +N+ +  +I  PT  V  + +  R +  F  +   
Sbjct: 367 TATSPYNTEHRHEVREALRQRGMDPKNIPFNALIVGPTSCVKTRFIVDRLRGPFRGKFDY 426

Query: 333 NVVSSLTVLYFCIYTG 380
            V+   T +Y   Y G
Sbjct: 427 IVLMCPTFVYNKTYDG 442


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +3

Query: 234 VVWRGIIPKPTRAVACKNVKSRSQRTFPFRLKLNVVSSLTVLYFCIYTGL 383
           ++W  ++  P+   A +N+  +    F F L+ N+V  + ++YF ++ G+
Sbjct: 251 LIWSSLLHSPSCNPAWENIPIQE---FKFHLEPNMVIDIALVYFLLFYGI 297


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 262 GFGMIPRQTTFSNVTRFLINTDENKCVCWGECGEIL 155
           GF     ++++ NVT  + + + N  +CW +C ++L
Sbjct: 541 GFVYAEHRSSYLNVTAIVKSFENNPVLCWLKCLDVL 576


>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = +3

Query: 156 NISPHSPQHTHLFSSVFIRKRVTFENVVWRGIIPKPTRAVACKNVKSRSQRTFPFRLKLN 335
           N SP++ +H H    V  ++ +  +N+ +  +I  PT     + +  R +  F  +    
Sbjct: 223 NKSPYNTEHRHEVREVLRQRGMDPKNIPFNALIVGPTSCGKTRFIVGRLRGPFRGKFDYI 282

Query: 336 VVSSLTVLYFCIYTG 380
           V+   T +Y   Y G
Sbjct: 283 VLVCPTFVYNKTYDG 297


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 289 TFLQATARVGFGMIPRQTTFSNVTRFLINTDENKCVCWGE--CGEILVVAALGRLV 128
           TF Q   +  FG   R+   ++V   L+N+D+   V +GE  CG+  ++A +   V
Sbjct: 416 TFCQKKCKTFFG---RKEAIASVKEELLNSDDRVVVLYGESGCGKTSLMAKIATQV 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,618,181
Number of Sequences: 59808
Number of extensions: 214778
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)