Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30892
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    83   1e-16
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    83   1e-16
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    83   1e-16
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    31   0.41 
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    30   0.72 
U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical pr...    30   0.95 

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 41/48 (85%), Positives = 42/48 (87%)
 Frame = +2

Query: 2   AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEG 145
           AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD  G  D+  EG
Sbjct: 196 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDV-GAEDQEQEG 242


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 41/48 (85%), Positives = 42/48 (87%)
 Frame = +2

Query: 2   AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEG 145
           AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD  G  D+  EG
Sbjct: 196 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDV-GAEDQEQEG 242


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 41/52 (78%), Positives = 43/52 (82%), Gaps = 2/52 (3%)
 Frame = +2

Query: 2   AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE--PAEGGD 151
           AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD   D  +    EGG+
Sbjct: 197 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDAATDDTDANETEGGN 248


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 346 DDTTFNFRRNGKVRCERLLTFLQATARVGFGMIPRQTTFSNVTRFLINTDENKCVC 179
           D   FNFRR G+  C +LLT   + A       P  T F+N T   +      C C
Sbjct: 276 DANGFNFRRTGRFSCMQLLT---SPAPPTTTQAPVTTCFNNGTLLNVANQGQTCFC 328


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 346 DDTTFNFRRNGKVRCERLLTFLQATARVGFGMIPRQTTFSNVTRFLINTDENKCVC 179
           D   FNFRR G+  C +LLT   + A       P  T F+N T   +      C C
Sbjct: 276 DANGFNFRRTGRFSCMQLLT---SPAPPTTTQAPVTTCFNNGTLLNVANQGQTCFC 328


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 346 DDTTFNFRRNGKVRCERLLTFLQATARVGFGMIPRQTTFSNVTRFLINTDENKCVC 179
           D   FNFRR G+  C +LLT   + A       P  T F+N T   +      C C
Sbjct: 276 DANGFNFRRTGRFSCMQLLT---SPAPPTTTQAPVTTCFNNGTLLNVANQGQTCFC 328


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 114  LKAMATSLPRAATTNISPHSPQHTHLFSSVFIRKRVTFENVVWRGIIPKPTRAVACKNVK 293
            LKA+   L  A T ++S  S +H HL  +     + T  ++    ++P  T A    NVK
Sbjct: 1043 LKAVMNQLAHALTAHLSSKSEEHKHLARTCI---QHTIRSIEPVSLLPAMTSATKKSNVK 1099

Query: 294  SR 299
             R
Sbjct: 1100 QR 1101


>U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical
           protein ZK328.6 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 207 IRKRVTFENVVWRGIIPKPTRAVACKNVKSRSQRTFPFRLKLNVVSSLTV 356
           IRK+   E V   G++PKP + V  K VK +  +   F  KL V    T+
Sbjct: 311 IRKKKETEVVTEEGVLPKPKKKVVKKVVKKK--KPIAFIKKLEVAGQCTL 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,368
Number of Sequences: 27780
Number of extensions: 153773
Number of successful extensions: 506
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)