Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30891
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    30   0.41 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   0.55 
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   2.2  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   2.2  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   5.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.7  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   8.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.9  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    25   8.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   8.9  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 506 KEKLRKTIEELKEENASLKQMLEE 577
           K++L+  I+ L+EEN SLKQ +E+
Sbjct: 355 KKRLQSAIQPLQEENNSLKQQIEQ 378


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 506  KEKLRKTIEELKEENASLKQ---MLEEANSFVEIIKEELANDSNNDTGID 646
            KE++ +   +L+EE A   +   ++E ANS VE++ E L++  N  T  D
Sbjct: 866  KERVLQLTNDLQEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIAD 915


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 QHSANDRE-NLVGRPTKGLKHQLSQESPGESVEVKRKNLLSKETQANLDTKISEDDLTNP 431
           +H A+  E +   +  +G     + + P   VEV  + LL +  +A+ D   S+D + + 
Sbjct: 69  EHGASSEEVSQNSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSS 128

Query: 432 KGASEKYWQILAEKRQLALQDALDEKRN 515
              SE    I   K +   Q+++D   +
Sbjct: 129 NKNSEV--SIKRRKTESNSQESVDSSNS 154


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 315 QLSQESPGESVEVKRKNLLSKETQANLDTKISEDDLTNPKGASEKYW-QILAEKRQLALQ 491
           +L+   P  S E+ +     K+   + D    EDD+   +      W +  A  R   L+
Sbjct: 329 ELNDRVPDVSSEIWKIFGKRKQDYVSRDVFSDEDDM---EATGHDVWREEQAAARAARLE 385

Query: 492 DALDEKRNYEKLLKN*RRK 548
           D L+E+R  E+ L   RRK
Sbjct: 386 DELEEQRERERELAKKRRK 404


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEIIKE 607
           +EKL   + +LKEE   L    EE    ++ IK+
Sbjct: 374 REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKK 407


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEIIKEE 610
           K+K  +T +E++    S   ++EEAN    ++KE+
Sbjct: 416 KQKYEQTCQEVERLQRSYNHVMEEANLQHPLVKEQ 450


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 512 KLRKTIEELKEENASLKQMLEEANSFVEIIKEELAN 619
           +LR    E  E N  L + LEE +SF+E  K+  +N
Sbjct: 201 RLRGQFMEPVEHNHPLSKSLEEQSSFLEQSKDASSN 236


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 402 KISEDDLTNPKGASEKYWQILAEKRQLALQDALDEKRNY 518
           K+  +  TNP    EK++Q+  + +QL L   L E+  Y
Sbjct: 119 KVWLESKTNPCLDMEKFFQLCEKFKQLGLSSVLKERFVY 157


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 512  KLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNNDTGIDVNDV 658
            K+R  + +L  +  S++ M+E+AN  +  +      + N    IDV D+
Sbjct: 1054 KVRAGMMKLTSQRFSVRAMMEDANETLGTLAFSKGIELNYTVDIDVPDI 1102


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 533 ELKEENASLKQMLEEANSFVEIIKEELANDSNND 634
           E +EEN  + + ++EA   +E++ E   +D +ND
Sbjct: 135 EEEEENDYIDEDVDEAGYDIEVVDEAENDDMDND 168


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
 Frame = +3

Query: 186 DFQNELA*TTGIHKNNKTITEDIQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKN 365
           + + +L  T G  + +  +           EN + +    L+ Q+ Q    + +E  +  
Sbjct: 416 ELEQQLLATRGQLEQSNVLLNQYDARVRTLENELSQAGVNLQEQIHQND--DLIESLKNQ 473

Query: 366 LLS----KETQANLDTKISEDDLTNPKGASEKYWQILAEKRQLALQDALDEKRNYEKLLK 533
           +L+     E  A L T++ ++ L        KY QI  + +  + Q+A+D+K   E+ +K
Sbjct: 474 ILTWKNKYEALAKLYTQLRQEHLD----LLSKYKQI--QLKASSAQEAIDKKEKMEREMK 527

Query: 534 N 536
           N
Sbjct: 528 N 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,364
Number of Sequences: 5004
Number of extensions: 54026
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)