Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30891
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 32 0.43
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 31 0.76
03_01_0632 - 4647271-4648704 31 0.76
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 31 1.3
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 31 1.3
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 31 1.3
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 29 4.0
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744... 28 7.1
11_01_0409 - 3096372-3097052,3097324-3098652 28 7.1
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 28 9.3
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 28 9.3
05_01_0488 - 4070506-4072277,4072455-4072557 28 9.3
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 9.3
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 509 EKLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNN 631
EKL++ +EL E+ ++KQ L+ NS V+ +K L D NN
Sbjct: 789 EKLKQAWDELNSESENIKQALDVKNSEVDKLKHAL--DENN 827
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 509 EKLRKTIEELKEENASLKQMLEEANSFVEIIK---EELANDSNN 631
EKL+ ++E E +LKQ L+ NS +E +K +EL ++S N
Sbjct: 761 EKLKHALDEKNAELENLKQTLDGNNSVLEKLKQAWDELNSESEN 804
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 515 LRKTIEELKEENASLKQMLEEANSFVEIIKEE 610
++ +E+ +EEN LKQ LEE S +++I +E
Sbjct: 96 MQTELEQTREENTQLKQSLEEKTSALDLIIQE 127
>03_01_0632 - 4647271-4648704
Length = 477
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/33 (36%), Positives = 25/33 (75%)
Frame = +2
Query: 515 LRKTIEELKEENASLKQMLEEANSFVEIIKEEL 613
+++ +EE + ENA+LK+ML + ++ ++ K+EL
Sbjct: 304 VKEALEEARGENAALKEMLGDKDTAIKCTKQEL 336
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 222 HKNNKTITEDIQHSANDRENLVG-RPTKGLKHQLSQESPGESVEVKRKNLLSKETQANLD 398
H + + D H A++++ + + + LK + +E E V+ + NLD
Sbjct: 281 HSTDDEDSSDESHDADEKDEIAHQKDSLNLKKNVDKEMTLEGSTVQEAGNSDNKEVENLD 340
Query: 399 TKISEDDLTNPKGASEKYWQILAEKRQLALQ 491
+++ EDD N + E+ ++ ++++LAL+
Sbjct: 341 SQLKEDD--NQEKEDEEA-ALITDEKKLALE 368
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEII-KEELANDSNNDTGIDVNDV 658
+E RK E+L+ A K +++E + +I K+E + D ND GI VNDV
Sbjct: 78 REMQRKIAEKLEMTQA--KDLIDEQDEADDINGKDESSRDVINDVGIAVNDV 127
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEII-KEELANDSNNDTGIDVNDV 658
+E RK E+L+ A K +++E + +I K+E + D ND GI VNDV
Sbjct: 78 REMQRKIAEKLEMTQA--KDLIDEQDEADDINGKDESSRDVINDVGIAVNDV 127
>09_04_0634 - 19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 195 NELA*TTGIHKNNKTITEDIQHSANDRENL---VGRPTKGLKHQLSQESPGE-SVEVKRK 362
N + T+ + N+T +Q +E + V + + H + E SVE K K
Sbjct: 837 NTIQNTSNAEEKNQTEDPAVQEGNKQKEGISPTVAKQSSERVHVPLKVLLAEASVETKEK 896
Query: 363 NLLSKETQANLDTKISEDDLTNPKGASEK 449
+KE + ++S+DD ++ K S K
Sbjct: 897 KTTAKERVLSFRRRVSKDDSSSAKSGSPK 925
>11_06_0527 + 24672649-24672707,24673459-24673817,24674366-24674435,
24674656-24674730,24674731-24674846,24674975-24675006,
24675117-24675242,24675379-24675537,24675886-24675978,
24676069-24676236,24676388-24676486,24676603-24676820,
24676900-24676957,24677421-24677509,24677590-24677721,
24678000-24678122,24678568-24678666,24678774-24678965,
24679127-24679298,24679416-24679572,24679704-24679906,
24680105-24680246,24680324-24680484,24680585-24680701,
24680788-24680874
Length = 1101
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 258 HSANDRENLVGRPTKGLKHQLSQESPGESVEVKR 359
H AND L G K +L++ PG S+E+ R
Sbjct: 963 HEANDGGLLAAIMAAGFKGELNRFQPGVSIEISR 996
>11_01_0409 - 3096372-3097052,3097324-3098652
Length = 669
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 518 RKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNNDTGIDV 649
RK + E++ E+ + M ++ + F+E ++++LAN + + DV
Sbjct: 7 RKLVMEVRVEDVNYNIMADDYSKFIEDLRKKLANHPHKEMIHDV 50
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 530 EELKEENASLKQMLEEANSFVEIIKEELANDSNND 634
E++ N S ++ LEE + +++ + L +DS+ND
Sbjct: 327 EDVSTSNQSNEKQLEEPSQLSDMLPDHLFDDSSND 361
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 330 SPGESVEVKR-KNLLSKETQANLDTKISEDDLTNPKGASEKYWQIL-AEKRQLALQDALD 503
SP E + R K LL K +N DT I +D L +YW+ L R L L +
Sbjct: 493 SPAELQKASRAKKLLEKRAASNEDT-IKDDLLCQTLALLHRYWEALQVINRTLKLGNDTL 551
Query: 504 EKRNYEKL 527
N E+L
Sbjct: 552 ADENKEEL 559
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNN 631
K L + +L E NASL+ L + ++ + +E AN+S N
Sbjct: 444 KSSLSAELSKLSEANASLEAKLASVEAELKQVYDEKANESLN 485
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 491 RCFR*KEKLRKTIEE---LKEENASLKQMLEEANSFVEIIKEE 610
+C +EKL + + L + SLKQ +EE N+ +E +K E
Sbjct: 1782 KCTSLREKLNVAVRKGKGLVQHRDSLKQTMEEMNTMIEKLKVE 1824
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,238,261
Number of Sequences: 37544
Number of extensions: 299885
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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