Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30891
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2...    31   1.1  
At2g46180.1 68415.m05742 intracellular protein transport protein...    30   1.5  
At3g13100.1 68416.m01640 ABC transporter family protein similar ...    30   1.9  
At1g30135.1 68414.m03684 expressed protein                             30   1.9  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    29   2.6  
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    29   2.6  
At3g28770.1 68416.m03591 expressed protein                             29   2.6  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    29   3.4  
At4g20900.1 68417.m03030 male sterility MS5 / pollenless 3 nearl...    29   3.4  
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac...    28   5.9  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     28   5.9  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    28   5.9  
At5g38900.1 68418.m04705 DSBA oxidoreductase family protein cont...    28   7.8  
At3g61570.1 68416.m06896 intracellular protein transport protein...    28   7.8  
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo...    28   7.8  
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    28   7.8  

>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
           HD-ZIP protein 2 identical to homeobox-leucine zipper
           protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
           SP:P46601; contains Pfam profiles PF04618: HD-ZIP
           protein N terminus, PF02183: Homeobox associated leucine
           zipper,  PF00046: Homeobox domain
          Length = 283

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
 Frame = +3

Query: 213 TGIHKNNKTITEDIQHSANDRENLVGR------------PTKGLKHQLSQESPGESVEVK 356
           TG+   N TI+  I    ++RE + G             P +G     S E        +
Sbjct: 70  TGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSR 129

Query: 357 RKNLLSKETQANLDTKISEDDLTNPK 434
           +K  LSK+  A L+    E +  NPK
Sbjct: 130 KKLRLSKDQSAFLEETFKEHNTLNPK 155


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNND 634
           KEK    I  L +EN SLKQ L   N+ ++  + +L+  SNN+
Sbjct: 96  KEK-EDQISRLNQENGSLKQNLTSTNAALKESRLDLSRASNNN 137


>At3g13100.1 68416.m01640 ABC transporter family protein similar to
            ATP-binding cassette transporter MRP8 GI:18031899 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1493

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 249  DIQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKNLLSKETQANLDTKISEDDLTN 428
            +I  S  D   LVG  T  L    S E    S +    +  SKE++ + D +  E+DL +
Sbjct: 833  EILESGTDFMELVGAHTDALAAVDSYEKGSASAQ----STTSKESKVSNDEEKQEEDLPS 888

Query: 429  PKG 437
            PKG
Sbjct: 889  PKG 891


>At1g30135.1 68414.m03684 expressed protein
          Length = 131

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 342 SVEVKRKNLLSKETQANLDTKISEDDLTNPKGASEKYWQILAEKRQLALQ 491
           S E+K K+  +     N  T    + L NPK + +K  Q   +KR++ +Q
Sbjct: 73  SREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQ 122


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +3

Query: 324 QESPGESVEVKRKNLLSKETQANLDTKISEDDLTNPKGASEKYWQILAEKRQLALQDALD 503
           +E   +  EVK  N   KE     DTK++E ++ + K  S+   +   E+++   ++++D
Sbjct: 206 EEETNKGEEVKEAN---KEDDVEADTKVAEPEVEDKKTESKDENEDKEEEKEDEKEESMD 262

Query: 504 EKRN 515
           +K +
Sbjct: 263 DKED 266


>At4g14760.1 68417.m02271 M protein repeat-containing protein
           contains Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 437 SIREILANIS*EKTIGFTRCFR*KE---KLRKTIEELKEENASLKQMLEEANSFVEIIKE 607
           S+++ L+ +  EK  G  R  +  E    L KTI + +E     +   E+A + ++ +K+
Sbjct: 241 SLKKELSRLQSEKEAGLLRYNKSLELISSLEKTIRDAEESVRVFRDQSEQAETEIKALKQ 300

Query: 608 EL--ANDSNNDTGI 643
           EL   N+ N D  +
Sbjct: 301 ELLKLNEVNEDLNV 314


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNNDTGIDVND 655
           KE ++  +E  K   +S+   LEEA     +   E  N  N  +G   ND
Sbjct: 354 KEDVKSEVEAAKNAGSSMTGKLEEAQRNNGVSTNETMNSENKGSGESTND 403


>At5g61460.1 68418.m07712 structural maintenance of chromosomes (SMC)
            family protein very strong similarity to SMC-like protein
            (MIM) [Arabidopsis thaliana] GI:5880614; contains Pfam
            profile PF02463: RecF/RecN/SMC N terminal domain
          Length = 1057

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
 Frame = +3

Query: 219  IHKNNKTITEDIQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKNLLSK-ETQANL 395
            +H    T+  +I+   +   N + R    +   L +    E+   K +N L + E +AN 
Sbjct: 696  MHDLKNTVAAEIEALPSSSVNELQRE---IMKDLEEIDEKEAFLEKLQNCLKEAELKANK 752

Query: 396  DTKISEDDLTNPKGASEKYWQILAEKRQLA--LQDALDEKRNYEKLLKN 536
             T + E+   + KG  + + +   E +++   LQ A  EK +YE ++KN
Sbjct: 753  LTALFENMRESAKGEIDAFEEAENELKKIEKDLQSAEAEKIHYENIMKN 801


>At4g20900.1 68417.m03030 male sterility MS5 / pollenless 3 nearly
           identical to male sterility MS5 [Arabidopsis thaliana]
           GI:3859112, pollenless3 [Arabidopsis thaliana]
           GI:4028970
          Length = 450

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +3

Query: 273 RENLVGRPTKGLKHQLSQESPGESVEVKRKNLLSKETQANLDTKISEDDLTNPKGASEKY 452
           R+ L G+P      Q+     GE   +KRK L   +       +  +D    PK  S+K 
Sbjct: 366 RKLLFGKPQPFGSEQMKILERGEEEPMKRKKL--DQNMIQYLHEFVKDTADGPKSESKKS 423

Query: 453 WQILAEKRQ 479
           W  +AE+ +
Sbjct: 424 WADIAEEEE 432


>At5g18560.1 68418.m02194 AP2 domain-containing transcription
           factor, putative AP2/EREBP-like transcription factor
           LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
          Length = 348

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 548 NASLKQMLEEANSFVEIIKEELANDSNNDTG 640
           N SL   L+E N+F   +  E  N SNN++G
Sbjct: 203 NGSLSSSLDEENNFFFSLTSEEHNKSNNNSG 233


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 724 CSRMFSLIIFSGILFCCFIC 665
           C R F+ +IF GI  C F+C
Sbjct: 810 CLRNFTTVIFFGISLCWFVC 829


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
            contains Pfam PF02138: Beige/BEACH domain; similar to LBA
            isoform gamma (GI:10257405) [Mus musculus]; similar to
            beige-like protein (CDC4L) - Homo sapiens; similar to
            Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
            protein homolog implicated in neuronal membrane traffic
            (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 345  QTPRGSLAKVDVSVLSLVYPPNFPYHLL 262
            Q    S   V  S LSLVYPPN+  H L
Sbjct: 948  QNCAASAVDVSPSPLSLVYPPNYRSHTL 975


>At5g38900.1 68418.m04705 DSBA oxidoreductase family protein
           contains Pfam profile: PF01323 DSBA-like thioredoxin
           domain
          Length = 217

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 506 KEKLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNNDTGI 643
           +E L +T  ++  E A  ++ L + N+ V  +KEELA  S N TG+
Sbjct: 145 REFLVETANKVGIEGA--EEFLSDPNNGVTEVKEELAKYSKNITGV 188


>At3g61570.1 68416.m06896 intracellular protein transport protein
           USO1-related contains weak similarity to intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 712

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 527 IEELKEENASLKQMLEEANSFVEIIKEELANDSNN 631
           I  L +EN SLKQ L   ++ ++  + +++  SNN
Sbjct: 104 ISRLNQENGSLKQNLTSTSAALKEARTDISRGSNN 138


>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
           similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
           (EPI64 protein) {Homo sapiens}; contains Pfam profile
           PF00566: TBC domain
          Length = 777

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 342 SVEVKRKNLLSKETQANLDTKISE--DDLTNPKGASE 446
           S+ VK+K  LSK  Q     KIS   DD  + KGAS+
Sbjct: 154 SIRVKKKGDLSKSEQEAPKVKISPSFDDAKSSKGASD 190


>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 509 EKLRKTIEELKEENASLKQMLEEANSFVEIIKEE 610
           E L++ IE+++ E    ++M+EE    +EI KEE
Sbjct: 482 EDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEE 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,847
Number of Sequences: 28952
Number of extensions: 267296
Number of successful extensions: 913
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)