Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30890X
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   2.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   2.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.7  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     24   6.5  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    24   6.5  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    24   6.5  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    24   8.6  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 222 TKLNTEN*NSNNIQLTNTKQFPK-SANEVNL 311
           T +  +N  +NN+ +T + Q PK SAN  NL
Sbjct: 9   TAIQIQNPINNNVSVTISDQLPKPSANNPNL 39


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 133 VIKMFKIPEWDSYVPESNIKFSRKTVKAKSQNLILKTETPIIFN*PTPSSFQKVQM 300
           V+K   +  +DS++  S  KF    V  +SQ  +   E+ +  + P P     V +
Sbjct: 391 VVKQLNMQRYDSFIKPSLPKFISSLVSDESQKSLAILESVLDNSVPVPVDVASVSL 446


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 NIQLTNTKQFPKSANEVNLNTKYKKINQIKNQESKN 362
           N  ++ +   P+S  ++NL  K+     IKN  +K+
Sbjct: 156 NNSISGSITIPESDQQINLQNKFLSTPSIKNNANKS 191


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 155 GILNILITIQLSIKNTV 105
           GILN L T+ LS++NTV
Sbjct: 625 GILNTLSTMILSLENTV 641


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -2

Query: 356 TFLVFYLIDFFVLCV*IDFICTFWKLLGVG*LNIIGVSVFSIKFCDFALTVFLLNLIF 183
           T L++ +  F   C+ +  +CT   LLG   +  I  +   + F  +  +V L    +
Sbjct: 98  TRLLYKINGFNSACLILGVVCTSIYLLGASCMEFIWDNFLQLMFAAYVFSVVLCTFCY 155


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 128 QLSIKNTVFSPSVQ--TFARYTLNAV 57
           +LSI   VFSPSV+      Y LNAV
Sbjct: 416 RLSIPQNVFSPSVRGSIHPEYDLNAV 441


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/28 (32%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 288 KSANEVNLNTKYKKI-NQIKNQESKNKN 368
           K  +++ ++ K +K+ +++KN+ SKN+N
Sbjct: 558 KELSKMMMSNKQRKLYSKLKNENSKNEN 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,981
Number of Sequences: 5004
Number of extensions: 27649
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)