Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30890X
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319...    28   2.0  
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982...    27   3.5  

>06_01_0451 +
           3194919-3195416,3195560-3195580,3196282-3196467,
           3197272-3197556
          Length = 329

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 185 FDSGT*LSHSGILNILITIQLSIKNTVFSPSVQTFARYTLNAVRRCFNESS 33
           F +G    HSG+   L+T+  S+   V++P+       T   +R  ++E S
Sbjct: 180 FYAGEGTDHSGVPTKLVTLNCSLHIAVYNPASMFGIHVTTGPIRLLYSEIS 230


>02_05_0469 +
           29297209-29297527,29297847-29297961,29298060-29298255,
           29298427-29298540,29298695-29298868,29299326-29299520,
           29299666-29299788,29299892-29300004,29300117-29300237,
           29300363-29300623,29301712-29301921
          Length = 646

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 148 KIPEWDSYVPESNIKFSRKTVKAKSQNLILKTET 249
           ++ E+ S V E N KF+ K      QNL L  ET
Sbjct: 506 RMDEFTSRVEELNCKFAIKKSSTSQQNLALPNET 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,784,347
Number of Sequences: 37544
Number of extensions: 135724
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)