Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30890X
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74031-18|CAA98453.3|  333|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin prote...    27   4.2  
AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin prote...    27   4.2  
U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF026215-1|AAB71319.1|  352|Caenorhabditis elegans Serpentine re...    26   7.3  
AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical...    26   9.7  

>Z74031-18|CAA98453.3|  333|Caenorhabditis elegans Hypothetical
           protein F32D8.1 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 260 NIIGVSVFSIKFCDFALTVFLLNLIF 183
           N++ V  FS+K CDF L   +L  ++
Sbjct: 197 NLLLVDKFSVKLCDFGLACHILGPLY 222


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 158 SGILNILITIQLSIKNT-VFSPSVQTFARYTLNAVRRCFNESSYNLFRLC 12
           SGI    I    S+  T +FS S Q+F+ Y+L +  R  + SS      C
Sbjct: 611 SGIFASFIQQNSSVSQTSIFSDSTQSFSSYSLFSRSRTVSSSSSQYAESC 660


>AF063009-2|AAO21399.1|  438|Caenorhabditis elegans Innexin protein
           19, isoform b protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -1

Query: 324 CTLCLN*LHLHFLETAWCW--LIEYYWSFSFQY*VL*FCLDGFPTEFNI*FRHI--TIPF 157
           C L +N ++       WCW  ++    + SF Y +    +     ++ + F  I  +  F
Sbjct: 274 CALLINIINEKVFAFLWCWYMILAIITTCSFIYWIANSFIHSEKVDYVMKFIQIAESSEF 333

Query: 156 RYFEHFNYNSTLY*EYSIFSFSPNI 82
           +  + F  ++T+   Y++ +F+P++
Sbjct: 334 KKLQKFEKDATVERLYTVIAFAPHL 358


>AF063009-1|AAM45360.1|  454|Caenorhabditis elegans Innexin protein
           19, isoform a protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -1

Query: 324 CTLCLN*LHLHFLETAWCW--LIEYYWSFSFQY*VL*FCLDGFPTEFNI*FRHI--TIPF 157
           C L +N ++       WCW  ++    + SF Y +    +     ++ + F  I  +  F
Sbjct: 290 CALLINIINEKVFAFLWCWYMILAIITTCSFIYWIANSFIHSEKVDYVMKFIQIAESSEF 349

Query: 156 RYFEHFNYNSTLY*EYSIFSFSPNI 82
           +  + F  ++T+   Y++ +F+P++
Sbjct: 350 KKLQKFEKDATVERLYTVIAFAPHL 374


>U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical
           protein F59G1.8a protein.
          Length = 215

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 231 NTEN*NSNNI---QLTNTKQFPKSANEVNLNTKYKKINQIKNQESKNK 365
           N +N N + +   ++T TKQ      EV + ++YK +   K  +++N+
Sbjct: 132 NEDNRNESEVIETRITETKQIGDGQYEVRIESRYKFLKTAKILKARNR 179


>U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical
           protein F59G1.8b protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 231 NTEN*NSNNI---QLTNTKQFPKSANEVNLNTKYKKINQIKNQESKNK 365
           N +N N + +   ++T TKQ      EV + ++YK +   K  +++N+
Sbjct: 135 NEDNRNESEVIETRITETKQIGDGQYEVRIESRYKFLKTAKILKARNR 182


>AF026215-1|AAB71319.1|  352|Caenorhabditis elegans Serpentine
           receptor, class h protein83 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 344 FYLIDFFVLCV*IDFICTFWKLLGVG*LNIIGVSVFSIKFCDFALTV 204
           F   D FVLC+  +++       G+G L  I   VF +  C + L V
Sbjct: 186 FTASDVFVLCIDENYVTFLALFTGIGVLTEIAQIVFFLACCVYYLFV 232


>AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical
           protein K09D9.1 protein.
          Length = 295

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 128 QLSIKNTVFSPSVQTFARYTLNAVRR 51
           Q  +  TVFS  +Q + +Y+LN  +R
Sbjct: 57  QEELDRTVFSQDIQPYVQYSLNKKKR 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,641,038
Number of Sequences: 27780
Number of extensions: 150267
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)