Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30890X
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.0  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   2.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   2.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   2.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   2.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 291 SANEVNLNTKYKKINQIKNQESKNKN 368
           +A+E N+  + KK+N    + S+N+N
Sbjct: 244 AAHEKNMREQAKKMNVASLRSSENQN 269


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 285 PKSANEVNLNTKYKKINQIKNQESKNKN 368
           PK  + ++ N KY   N   N    N N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNN 106


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 285 PKSANEVNLNTKYKKINQIKNQESKNKN 368
           PK  + ++ N KY   N   N    N N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNN 106


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 285 PKSANEVNLNTKYKKINQIKNQESKNKN 368
           PK  + ++ N KY   N   N    N N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNN 106


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 285 PKSANEVNLNTKYKKINQIKNQESKNKN 368
           PK  + ++ N KY   N   N    N N
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNN 106


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 291 SANEVNLNTKYKKINQIKNQESKNKN 368
           +A+E N+  + KK+N    + S+N+N
Sbjct: 120 AAHEKNMREQAKKMNVASLRSSENQN 145


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 318 KYKKINQIKNQESK 359
           KYK I +I N+ES+
Sbjct: 320 KYKYIREIMNKESR 333


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 318 KYKKINQIKNQESK 359
           KYK I +I N+ES+
Sbjct: 320 KYKYIREIMNKESR 333


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 154 PEWDSYVPES 183
           PEWD+  PE+
Sbjct: 134 PEWDTVTPEA 143


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 276 KQFPKSANEVNLNTKY 323
           K F ++ NE+N N  Y
Sbjct: 47  KYFEQTLNELNFNLNY 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,175
Number of Sequences: 438
Number of extensions: 1807
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)