Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30890X
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04630.1 68418.m00468 cytochrome P450, putative cytochrome P4...    27   3.9  
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER...    27   5.2  
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    26   6.8  
At3g10570.1 68416.m01268 cytochrome P450, putative similar to cy...    26   6.8  
At5g57240.1 68418.m07151 oxysterol-binding family protein low si...    26   9.0  
At5g06310.1 68418.m00707 expressed protein similar to unknown pr...    26   9.0  

>At5g04630.1 68418.m00468 cytochrome P450, putative cytochrome P450
           77A3p, Glycine max, PIR:T05948
          Length = 509

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 157 EWDSYVPESNIKFSRKTVKA 216
           EW SY PES + F+ K V A
Sbjct: 475 EWSSYPPESQVDFTGKLVFA 494


>At4g05230.1 68417.m00789 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 206

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 252 NNIQLTNTKQFPKS-ANEVNLNTKYKKINQIKNQESKNKN 368
           NNIQ+  T+QFP+S + E   N  ++    I    + N N
Sbjct: 79  NNIQVFKTEQFPQSNSTEQTSNGHHESTVMIPMSNNNNNN 118


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 154 PEWDSYVPESNIKFSRKTVKAKSQNLILK 240
           P+ D   PESN+KF    +K K ++ I+K
Sbjct: 66  PDSDLGNPESNLKFVDLLIKVKKKDPIIK 94


>At3g10570.1 68416.m01268 cytochrome P450, putative similar to
           cytochrome P450 77A3 GB:O48928 [Glycine max]
          Length = 513

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 130 IVIKMFKIPEWDSYVPESNIKFSRK 204
           ++ KM +  EW +Y PES I F+ K
Sbjct: 470 MLAKMVQEFEWSAYPPESEIDFAGK 494


>At5g57240.1 68418.m07151 oxysterol-binding family protein low
           similarity to SP|P22059 Oxysterol-binding protein 1
           {Homo sapiens}; contains Pfam profile PF01237:
           Oxysterol-binding protein
          Length = 379

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 160 WDSYVPESNIKFSRKTVKAKSQNLILKTETPIIFN 264
           WD  V   N K  +  V  K+   I K +TPI+ N
Sbjct: 260 WDRTVTAKNTKTGQLEVIYKASENIAKLKTPIVEN 294


>At5g06310.1 68418.m00707 expressed protein similar to unknown
           protein (gb|AAD29059.1)
          Length = 463

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 161 HSGILNILITIQLSIKNTVFSPSVQTFARYTLNAVRRCFNESSYNL 24
           H  +LN+   + + + N  F+PS  T  +YT++     F+   + L
Sbjct: 251 HVKLLNLFFQVNMGLWNATFTPS--TKMQYTMSREMEAFSPQRFLL 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,892,125
Number of Sequences: 28952
Number of extensions: 126800
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)