Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30889
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.40 
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.69 
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.9  

>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +3

Query: 93  CQKYFLCIDGHPRVLYCGGESAFDDLTSTCVSADEVGACPAELRAAAVRAKDDASNCSPK 272
           C+ +FL  +  P+ + C    AF DLT +      V AC    RAA  RA  DAS+C  +
Sbjct: 40  CRGHFLVSE--PKTIPCLHRCAFLDLTKS--RGRVVHACS---RAALPRAIADASHCLEE 92

Query: 273 KSNSMRIN 296
           K     +N
Sbjct: 93  KKFFCNVN 100


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 96  QKYFLCIDGHPRVLYCGGESAFDDLTSTCVSADEVGACPAE-LRAAAVRAKDDASNCSPK 272
           Q  F C+D H + L      + DD++    ++D +   P E L    +    D+ N S K
Sbjct: 436 QPQFTCLDDHEKTLRETSFRSLDDMSLRKSNSDNIFVKPGEDLEIPLLSDYSDSENISEK 495

Query: 273 KSN 281
            S+
Sbjct: 496 SSD 498


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 LCIDGHPRVLYCGGESAFDDLTSTCVSADEVGACPA 215
           LC+D H R+++   ++   DL +  V A+   A  A
Sbjct: 224 LCVDQHGRIVFDSSDTVIKDLENKDVEAESQEAVVA 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,396
Number of Sequences: 5004
Number of extensions: 40927
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)