Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30889
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    29   2.8  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    28   5.0  
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    27   8.7  
06_03_0161 - 17369081-17369670,17370745-17370760,17370974-173717...    27   8.7  

>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 507 LDKQFHYHYSMLLDLIIVKQEVIY*KNIVKIGNLIIRLDNMCFRNSLDFLPF*CAKCKT 331
           L+K  H  +  +  +I+ K E     + +K+G++I  LD M F N+ +F      +C T
Sbjct: 360 LEKICH-EFPKVCGVIVEKVEPSAEHSEIKVGDIITHLDGMAFSNAAEFGGILLDRCVT 417


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 SAFDDLTSTCVSADEVGACPAELRAAAVR 239
           + FDD  ST  +AD+V A P    AA  R
Sbjct: 78  NCFDDAPSTAAAADDVAAVPVASPAAPAR 106


>06_03_0813 - 24853119-24854480,24854711-24855442,24855556-24855962,
            24856091-24856359,24856681-24856733,24857019-24857078,
            24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 129  RVLYCGGESAFDDLTSTCVSADEVGACPAELRAAAVRAKDDASNCS 266
            R  +  G+S  D+ ++   + + + A  AE     V   DDAS+CS
Sbjct: 1151 RHTFLAGDSYHDERSAIYAACNALAAAVAEQSVPPVMDGDDASHCS 1196


>06_03_0161 -
           17369081-17369670,17370745-17370760,17370974-17371754,
           17371871-17371972,17372078-17372397
          Length = 602

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 270 LASSCLRRPWHGLLRPL 220
           +AS C R+PW G++R L
Sbjct: 293 IASECARKPWDGIVRRL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,837
Number of Sequences: 37544
Number of extensions: 267944
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)