Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30889
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)...    29   1.8  
At5g63790.1 68418.m08006 no apical meristem (NAM) family protein...    29   2.4  
At5g08790.1 68418.m01042 no apical meristem (NAM) family protein...    29   2.4  
At3g45880.1 68416.m04965 hypothetical protein                          29   3.1  
At5g55490.1 68418.m06911 expressed protein                             27   7.2  
At2g19170.1 68415.m02237 subtilase family protein contains simil...    27   9.6  

>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
           E2; identical to ubiquitin-conjugating enzyme 15
           GI:2801442 from [Arabidopsis thaliana]
          Length = 161

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 45  ELGPPAGYRYYRSDNNCQKYFLCIDGHPRVLY 140
           +L PP G+R+  +D N QK+ + + G P  LY
Sbjct: 28  QLNPPTGFRHKVTD-NLQKWTIDVTGAPGTLY 58


>At5g63790.1 68418.m08006 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           contains similarity to NAC-domain protein
          Length = 312

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 45  ELGPPAGYRYYRSDNNCQKYFLC 113
           EL  PAG+R++ +D    K++LC
Sbjct: 47  ELNLPAGFRFHPTDEELVKFYLC 69


>At5g08790.1 68418.m01042 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 283

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 45  ELGPPAGYRYYRSDNNCQKYFLC 113
           EL  PAG+R++ +D    K++LC
Sbjct: 4   ELNLPAGFRFHPTDEELVKFYLC 26


>At3g45880.1 68416.m04965 hypothetical protein
          Length = 431

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/46 (21%), Positives = 27/46 (58%)
 Frame = -3

Query: 167 IVECGLTAAIEDARMPIDAQEILLAIVVRPVVSISGWGTKFSTYWY 30
           +++ GL       R+ I+A+++  A+  + V+++ G+G ++   W+
Sbjct: 384 LIQSGLIDMYRKYRLVINAEKVFRAMEGQTVLTVGGYGFEYYAEWF 429


>At5g55490.1 68418.m06911 expressed protein
          Length = 537

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 519 LFNDLDKQFHYHYSMLLDLIIVKQEVIY 436
           +F  LDK F  H +MLL+  ++K  VIY
Sbjct: 352 MFVALDKLFALHNAMLLESRVIKAFVIY 379


>At2g19170.1 68415.m02237 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 815

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 102 YFLCIDGHPRVLYCGGESAFDDLTSTCVSADE 197
           Y + ++G P + Y GGE+ F+   +T V +DE
Sbjct: 22  YIVTMEGDPIISYKGGENGFE---ATAVESDE 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,041
Number of Sequences: 28952
Number of extensions: 211865
Number of successful extensions: 443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)