Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30888
(749 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P12004 Cluster: Proliferating cell nuclear antigen; n=8... 139 6e-32
UniRef50_Q9ZW35 Cluster: Proliferating cell nuclear antigen 2; n... 126 6e-28
UniRef50_Q5K7Y2 Cluster: Proliferating cell nuclear antigen; n=1... 118 1e-25
UniRef50_Q9VIT0 Cluster: CG10262-PA; n=3; Sophophora|Rep: CG1026... 112 8e-24
UniRef50_A6RIU4 Cluster: Proliferating cell nuclear antigen; n=2... 109 5e-23
UniRef50_P11038 Cluster: Probable DNA polymerase sliding clamp; ... 102 1e-20
UniRef50_Q8X1W1 Cluster: Proliferating cell nuclear antigen; n=1... 101 2e-20
UniRef50_Q4P3B0 Cluster: Proliferating cell nuclear antigen; n=1... 98 2e-19
UniRef50_A2DQV2 Cluster: Proliferating cell nuclear antigen, put... 93 7e-18
UniRef50_Q8GZE5 Cluster: Proliferating cell nuclear antigen; n=1... 92 1e-17
UniRef50_Q5CW01 Cluster: Proliferating cell nuclear antigen PCNA... 91 3e-17
UniRef50_Q4QF35 Cluster: Proliferating cell nuclear antigen; n=6... 91 3e-17
UniRef50_Q5CJE0 Cluster: Proliferating cell nuclear antigen; n=2... 91 4e-17
UniRef50_P61074 Cluster: Proliferating cell nuclear antigen; n=8... 91 4e-17
UniRef50_O02115 Cluster: Proliferating cell nuclear antigen; n=6... 88 2e-16
UniRef50_Q9NGR7 Cluster: Proliferating cell nuclear antigen 1; n... 87 3e-16
UniRef50_UPI000049949B Cluster: proliferating cell nuclear antig... 85 2e-15
UniRef50_A0BN24 Cluster: Proliferating cell nuclear antigen; n=4... 85 2e-15
UniRef50_Q8WSN0 Cluster: Proliferating cell nuclear antigen 2; n... 84 4e-15
UniRef50_A5Z0S2 Cluster: Proliferating cell nuclear antigen 2; n... 81 2e-14
UniRef50_P15873 Cluster: Proliferating cell nuclear antigen; n=1... 81 2e-14
UniRef50_Q98SC0 Cluster: Proliferating cell nuclear antigen; n=1... 78 2e-13
UniRef50_A7AUH5 Cluster: Proliferating cell nuclear antigen; n=3... 77 6e-13
UniRef50_A7AVH8 Cluster: Proliferating cell nuclear antigen 1; n... 73 6e-12
UniRef50_A2F7D4 Cluster: Proliferating cell nuclear antigen, put... 69 1e-10
UniRef50_O10308 Cluster: Probable DNA polymerase sliding clamp; ... 64 5e-09
UniRef50_Q4A3A5 Cluster: Putative proliferating cell nuclear ant... 63 6e-09
UniRef50_A0RXH7 Cluster: DNA polymerase sliding clamp subunit; n... 62 2e-08
UniRef50_Q9NGR6 Cluster: Proliferating cell nuclear antigen 2; n... 59 1e-07
UniRef50_Q84513 Cluster: Probable DNA polymerase sliding clamp 1... 59 1e-07
UniRef50_Q8SRV9 Cluster: Proliferating cell nuclear antigen; n=1... 58 2e-07
UniRef50_A7KA48 Cluster: Putative uncharacterized protein Z788R;... 57 5e-07
UniRef50_Q6LWJ8 Cluster: DNA polymerase sliding clamp; n=8; cell... 56 1e-06
UniRef50_Q64803 Cluster: 20.6 kDa protein; n=1; Autographa calif... 53 7e-06
UniRef50_Q7QSA2 Cluster: Proliferating cell nuclear antigen; n=1... 53 7e-06
UniRef50_O27367 Cluster: DNA polymerase sliding clamp; n=3; Meth... 53 9e-06
UniRef50_Q3LWE0 Cluster: Proliferating cell nuclear antigen; n=1... 52 2e-05
UniRef50_Q4JAI6 Cluster: DNA polymerase sliding clamp 1; n=6; Su... 49 1e-04
UniRef50_A4YIY6 Cluster: DNA polymerase sliding clamp; n=1; Meta... 46 0.001
UniRef50_O73947 Cluster: DNA polymerase sliding clamp; n=7; Ther... 44 0.005
UniRef50_O41056 Cluster: Probable DNA polymerase sliding clamp 2... 44 0.005
UniRef50_UPI00015BB244 Cluster: DNA polymerase sliding clamp sub... 43 0.009
UniRef50_A3DM84 Cluster: DNA polymerase sliding clamp; n=1; Stap... 43 0.009
UniRef50_A2BIU0 Cluster: DNA polymerase sliding clamp subunit; n... 43 0.009
UniRef50_A2BN98 Cluster: DNA polymerase sliding clamp B2; n=1; H... 42 0.012
UniRef50_Q9HJQ0 Cluster: DNA polymerase sliding clamp; n=5; Ther... 42 0.021
UniRef50_A3HAI1 Cluster: DNA polymerase sliding clamp; n=1; Cald... 40 0.065
UniRef50_A7K9E0 Cluster: Putative uncharacterized protein Z530L;... 39 0.15
UniRef50_A7IV77 Cluster: Putative uncharacterized protein M697L;... 38 0.20
UniRef50_Q7T6Y0 Cluster: Probable DNA polymerase sliding clamp; ... 38 0.35
UniRef50_Q8ZTY0 Cluster: DNA polymerase sliding clamp A; n=4; Py... 37 0.46
UniRef50_A7JF77 Cluster: Putative uncharacterized protein; n=9; ... 37 0.61
UniRef50_Q74MV1 Cluster: DNA polymerase sliding clamp; n=2; Nano... 37 0.61
UniRef50_Q8QNE7 Cluster: EsV-1-132; n=2; Phaeovirus|Rep: EsV-1-1... 36 1.1
UniRef50_Q016T8 Cluster: Chromosome 06 contig 1, DNA sequence; n... 36 1.4
UniRef50_Q7D6X4 Cluster: Substrate--CoA ligase, putative; n=13; ... 35 1.9
UniRef50_Q1V1W0 Cluster: Putative uncharacterized protein; n=2; ... 35 1.9
UniRef50_A7C6V8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_Q9YEZ5 Cluster: DNA polymerase sliding clamp B2; n=1; A... 34 3.3
UniRef50_Q5UQH4 Cluster: Uncharacterized protein L823; n=1; Acan... 34 4.3
UniRef50_Q5JH70 Cluster: Oligosaccharyl transferase, STT3 subuni... 33 5.7
UniRef50_UPI00015A4CC8 Cluster: Subcommissural organ spondin; n=... 33 7.5
UniRef50_Q187F0 Cluster: Putative signaling protein precursor; n... 33 7.5
UniRef50_Q4PID5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.5
UniRef50_P38947 Cluster: Succinate-semialdehyde dehydrogenase [N... 33 7.5
UniRef50_Q8TWK3 Cluster: DNA polymerase sliding clamp; n=1; Meth... 33 9.9
>UniRef50_P12004 Cluster: Proliferating cell nuclear antigen; n=83;
Eukaryota|Rep: Proliferating cell nuclear antigen - Homo
sapiens (Human)
Length = 261
Score = 139 bits (337), Expect = 6e-32
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 4e-25
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.012
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>UniRef50_Q9ZW35 Cluster: Proliferating cell nuclear antigen 2;
n=60; Eukaryota|Rep: Proliferating cell nuclear antigen
2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 264
Score = 126 bits (304), Expect = 6e-28
Identities = 53/86 (61%), Positives = 71/86 (82%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG+ D +TIKA D +D VTF+FESP Q+K++D+EMKLM++D EHLGIP+ EY +RM
Sbjct: 80 KCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PS EF+RIC+DLS G+++VIS TK+
Sbjct: 140 PSGEFSRICKDLSSIGDTVVISVTKE 165
Score = 116 bits (280), Expect = 5e-25
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E RL++ S+LKKVLEA+KDL+ A FDC G LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+SMGMNLG+MSK+
Sbjct: 61 RCDRNLSMGMNLGNMSKM 78
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +Y+N FTKAT LS V +S+S+++P+VVEY++
Sbjct: 208 ALRYMNSFTKATPLSETVTISLSSELPVVVEYKV 241
Score = 39.5 bits (88), Expect = 0.086
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
KEGVKFS GDIG+AN+ L Q ++D+
Sbjct: 164 KEGVKFSTAGDIGTANIVLRQNTTVDK 190
>UniRef50_Q5K7Y2 Cluster: Proliferating cell nuclear antigen; n=1;
Filobasidiella neoformans|Rep: Proliferating cell
nuclear antigen - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 343
Score = 118 bits (285), Expect = 1e-25
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCA D D VT+KA D+AD + +FESP +++V +YEMKLM++D EHLGIP+T+Y T+ M
Sbjct: 80 KCAKDTDVVTLKASDDADALNLIFESPKEDRVGEYEMKLMDIDQEHLGIPDTQYDATVSM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
S+EFARICRDL+ GES+ I C+K+
Sbjct: 140 SSAEFARICRDLAVLGESVKIECSKE 165
Score = 100 bits (239), Expect = 4e-20
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EAR+ ++ +LKK+L+AIK+L++ DC + GI LQAMDNSH++LV+L L A FD+Y
Sbjct: 1 MLEARVKQAVVLKKLLDAIKELVSDGNLDCTEEGISLQAMDNSHIALVALKLEASEFDEY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+ +G+NL S++KI
Sbjct: 61 RCDRNMPLGVNLASLTKI 78
>UniRef50_Q9VIT0 Cluster: CG10262-PA; n=3; Sophophora|Rep:
CG10262-PA - Drosophila melanogaster (Fruit fly)
Length = 255
Score = 112 bits (270), Expect = 8e-24
Identities = 47/86 (54%), Positives = 65/86 (75%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCA D VTIKA D + +T FES +E+ +DYE+KL+NLD +H+ IP+ +Y+C I++
Sbjct: 80 KCANSDDAVTIKAVDRPEKITLSFESDGKERTADYELKLLNLDQDHMEIPKKDYTCFIQL 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PSSEFARICRD+S F ES+ I+C+ K
Sbjct: 140 PSSEFARICRDMSMFDESLTIACSSK 165
Score = 103 bits (247), Expect = 5e-21
Identities = 41/78 (52%), Positives = 66/78 (84%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EARL ++ +LKK+++A+K+++ Q T DC +NG++LQ+MDNSHVSLV+L+L +D F+K+
Sbjct: 1 MLEARLSQTLLLKKIVDALKEIIAQGTLDCSENGLELQSMDNSHVSLVALSLASDCFEKF 60
Query: 200 RCDRNISMGMNLGSMSKI 253
CDRN+S+G++L S+ K+
Sbjct: 61 HCDRNVSLGLDLKSLGKV 78
Score = 38.7 bits (86), Expect = 0.15
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN FTKAT L+ +V+L +S + PL+VEY I
Sbjct: 203 AGRYLNTFTKATPLADRVKLYLSDERPLLVEYPI 236
>UniRef50_A6RIU4 Cluster: Proliferating cell nuclear antigen; n=2;
Sclerotiniaceae|Rep: Proliferating cell nuclear antigen
- Botryotinia fuckeliana B05.10
Length = 259
Score = 109 bits (263), Expect = 5e-23
Identities = 47/78 (60%), Positives = 66/78 (84%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EARL ++ +LKKV++AIKDL+ FDC+D+GI LQAMDNSHV+LVS+ L+A+GF Y
Sbjct: 1 MLEARLEQADLLKKVVDAIKDLVQDCNFDCNDSGIALQAMDNSHVALVSMMLKAEGFSPY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+++G+NL S++K+
Sbjct: 61 RCDRNVALGVNLTSLTKV 78
Score = 96.3 bits (229), Expect = 7e-19
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
+ A ++D +TIKA+D D + VFES +++S+Y++KLM++D EHLGIP+TEY+ I M
Sbjct: 80 RAAQNEDILTIKAEDAPDVLNLVFESSESDRLSEYDLKLMDIDQEHLGIPDTEYAAVINM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PSSEF RIC DL ES+ I +K
Sbjct: 140 PSSEFKRICVDLMALSESVSIEASK 164
Score = 37.1 bits (82), Expect = 0.46
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +2
Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPG 745
+YL F KA LS V+L +S +VPL+VEY++ G
Sbjct: 210 KYLVNFCKAAGLSKSVKLCLSNEVPLLVEYQLAG 243
>UniRef50_P11038 Cluster: Probable DNA polymerase sliding clamp;
n=4; Nucleopolyhedrovirus|Rep: Probable DNA polymerase
sliding clamp - Autographa californica nuclear
polyhedrosis virus (AcMNPV)
Length = 256
Score = 102 bits (244), Expect = 1e-20
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEA ++LK+++E KDLL ATFDCD+ G+ +Q MD SHV+LVSL L A+GF KY
Sbjct: 1 MFEAEFKTGAVLKRLVETFKDLLPHATFDCDNRGVSMQVMDTSHVALVSLQLHAEGFKKY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+ + +++ S+SKI
Sbjct: 61 RCDRNVPLNVSINSLSKI 78
Score = 95.9 bits (228), Expect = 9e-19
Identities = 37/86 (43%), Positives = 62/86 (72%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KC ++ +V +KA+D D + FVF + N ++ Y +KLM +D+EHLGIP+++Y C + M
Sbjct: 80 KCVNERSSVLMKAEDQGDVMAFVFNNDN--RICTYTLKLMCIDVEHLGIPDSDYDCVVHM 137
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
S EFA++C+D++QF +++SC+KK
Sbjct: 138 SSVEFAQVCKDMTQFDHDIIVSCSKK 163
>UniRef50_Q8X1W1 Cluster: Proliferating cell nuclear antigen; n=1;
Coprinopsis cinerea|Rep: Proliferating cell nuclear
antigen - Coprinus cinereus (Inky cap fungus)
(Hormographiella aspergillata)
Length = 368
Score = 101 bits (242), Expect = 2e-20
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCA D D T+KA D AD + ++E+ N +++++YEMKLM +D + L IP+TEY + M
Sbjct: 80 KCAKDDDICTLKAADEADVLNLIYEAKNSDRIAEYEMKLMEIDADALTIPDTEYEARVTM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PSSEFARI RDLSQ GES+ I +K+
Sbjct: 140 PSSEFARIVRDLSQLGESVRIEVSKE 165
Score = 101 bits (241), Expect = 3e-20
Identities = 42/78 (53%), Positives = 63/78 (80%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EA+L + +LKK+L+AIK+L+T A F+C++ GI LQAMDNSHV+LV++ + GF +Y
Sbjct: 1 MLEAKLAEAGLLKKLLDAIKELVTDANFECNEEGINLQAMDNSHVALVAVKILVSGFKRY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDR + +G+NLGS++K+
Sbjct: 61 RCDRPMPLGVNLGSLTKV 78
Score = 39.5 bits (88), Expect = 0.086
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
+YL F K+TSLS +VQL MS DVPL+V Y
Sbjct: 321 KYLVNFAKSTSLSAKVQLMMSNDVPLLVSY 350
>UniRef50_Q4P3B0 Cluster: Proliferating cell nuclear antigen; n=1;
Ustilago maydis|Rep: Proliferating cell nuclear antigen
- Ustilago maydis (Smut fungus)
Length = 289
Score = 97.9 bits (233), Expect = 2e-19
Identities = 42/78 (53%), Positives = 64/78 (82%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EARL + +LKKVL+A+++L+T A F+C ++GI+LQAMDNSHV+L ++ LR D F+++
Sbjct: 1 MLEARLPEAVLLKKVLDAVRELITDANFECSEDGIRLQAMDNSHVALSAIELRTDCFEEF 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDR +S+G++L S+ KI
Sbjct: 61 RCDRPMSIGVSLSSLGKI 78
Score = 97.5 bits (232), Expect = 3e-19
Identities = 40/86 (46%), Positives = 59/86 (68%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
K A + D + +K D+ D + FESP ++V ++EMKLM++D EHLGIP+T+Y ++M
Sbjct: 80 KSANNDDVLALKKSDDGDTLQMTFESPKSDRVGEFEMKLMDIDSEHLGIPDTQYDAVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
S EF RICRDL+ GES+ I +K+
Sbjct: 140 SSGEFGRICRDLANIGESVKIEVSKE 165
Score = 34.3 bits (75), Expect = 3.3
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
+YL+ F KA L+ +VQL MS +VPL+ E+
Sbjct: 240 KYLSNFAKAAPLADEVQLHMSNEVPLLCEF 269
>UniRef50_A2DQV2 Cluster: Proliferating cell nuclear antigen,
putative; n=1; Trichomonas vaginalis G3|Rep:
Proliferating cell nuclear antigen, putative -
Trichomonas vaginalis G3
Length = 263
Score = 93.1 bits (221), Expect = 7e-18
Identities = 39/78 (50%), Positives = 58/78 (74%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E RL LKK+L+A++DL+ +A +C + G+ LQAMD +HV+LVS+ L A+GF+KY
Sbjct: 1 MVECRLTNPGNLKKILDALRDLVEEANIECSETGLSLQAMDTAHVALVSMNLNANGFEKY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
C +N S+G+NLG++ KI
Sbjct: 61 NCAQNTSLGVNLGAIQKI 78
Score = 75.8 bits (178), Expect = 1e-12
Identities = 31/85 (36%), Positives = 55/85 (64%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KC + D +T++ ++ + F FE+ + ++ +++M LM++ EHL IP+ E TI +
Sbjct: 80 KCGDNNDVLTLETNEDQSCLKFKFENSSSDRYFEFQMNLMDISSEHLSIPDAEPEATITL 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
SEF +ICRDL+QFG+++ I+ K
Sbjct: 140 GCSEFQKICRDLAQFGDTVKITVEK 164
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
A +YLN FTKA LS V+L +S D P +V++
Sbjct: 208 ALRYLNLFTKAAPLSENVKLCLSNDRPFLVQF 239
>UniRef50_Q8GZE5 Cluster: Proliferating cell nuclear antigen; n=16;
Dinophyceae|Rep: Proliferating cell nuclear antigen -
Pyrocystis lunula (Dinoflagellate)
Length = 259
Score = 92.3 bits (219), Expect = 1e-17
Identities = 41/76 (53%), Positives = 58/76 (76%)
Frame = +2
Query: 26 EARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRC 205
EA L ++ +LKKV++AIKDL FDC + G+Q+Q+MD+SHV+LVSL LR F ++RC
Sbjct: 4 EAHLQQAVLLKKVVDAIKDLCKDVNFDCSEKGLQVQSMDSSHVALVSLLLRESAFAEFRC 63
Query: 206 DRNISMGMNLGSMSKI 253
DR S+GMN+ S++KI
Sbjct: 64 DRPTSLGMNVDSLAKI 79
Score = 87.8 bits (208), Expect = 2e-16
Identities = 35/86 (40%), Positives = 61/86 (70%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
K G D++ ++ + +AD V+F ES +++++D+E+KLM ++ EH+ IPE Y + ++
Sbjct: 81 KMCGTSDSLKLRWRGDADMVSFQCESGEEDRIADFELKLMQIESEHMEIPEQHYKVSAKL 140
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PSSEF +ICRDL +FGE+M + +K+
Sbjct: 141 PSSEFQKICRDLKEFGETMQVKASKE 166
>UniRef50_Q5CW01 Cluster: Proliferating cell nuclear antigen PCNA;
n=2; Cryptosporidium|Rep: Proliferating cell nuclear
antigen PCNA - Cryptosporidium parvum Iowa II
Length = 262
Score = 91.1 bits (216), Expect = 3e-17
Identities = 38/97 (39%), Positives = 67/97 (69%)
Frame = +1
Query: 223 GHESRQHVKDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGI 402
G ++ VK K + D V ++ D+++++ F+FE+PN ++VS++E+ L+++D + L I
Sbjct: 69 GLNTQNVVKLLKLCSNDDQVLLRHDDDSESLIFIFETPNGDRVSEFELTLISIDQDSLQI 128
Query: 403 PETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKK 513
PET +S + MPS+EF R+CRD++QF +S+ I T K
Sbjct: 129 PETSFSSVVTMPSNEFQRLCRDMAQFSDSLSIDVTSK 165
Score = 89.4 bits (212), Expect = 8e-17
Identities = 38/78 (48%), Positives = 58/78 (74%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL IL+KV EAI +L++ +C+++G+ +QAMDNSHVSLV L L+ F++Y
Sbjct: 1 MFEARLSNGGILRKVFEAITNLVSDVNLECNESGVTIQAMDNSHVSLVGLYLKDTAFERY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCD+N ++G+N ++ K+
Sbjct: 61 RCDKNRTLGLNTQNVVKL 78
Score = 39.5 bits (88), Expect = 0.086
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPG 745
+YLN F KAT LS V+LSMS + PL +EY + G
Sbjct: 208 RYLNNFAKATPLSNSVKLSMSENQPLELEYPLEG 241
>UniRef50_Q4QF35 Cluster: Proliferating cell nuclear antigen; n=6;
Trypanosomatidae|Rep: Proliferating cell nuclear antigen
- Leishmania major
Length = 293
Score = 91.1 bits (216), Expect = 3e-17
Identities = 40/92 (43%), Positives = 65/92 (70%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EA++ +S+ K+++E I L+ +A FDC+ G+ +QAMD+SHV+LV + LR D F KY
Sbjct: 1 MLEAQVQYASLWKRLVECINGLVNEANFDCNPGGLSIQAMDSSHVALVHMLLRDDCFVKY 60
Query: 200 RCDRNISMGMNLGSMSKIPNVLEIRIQLQ*KH 295
+C+RNI +G+NL S+SK+ +++ L +H
Sbjct: 61 QCERNIILGLNLASLSKVLKIVDGNDSLSLRH 92
Score = 74.1 bits (174), Expect = 3e-12
Identities = 29/86 (33%), Positives = 58/86 (67%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
K D+++++ D++D VT E+P + + +Y++KL+ ++ E +GIPE +Y T+ +
Sbjct: 80 KIVDGNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTL 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
S+EFA+I RD+ FG+++ I+ +K+
Sbjct: 140 NSAEFAKIVRDMQVFGDTVTIAISKE 165
>UniRef50_Q5CJE0 Cluster: Proliferating cell nuclear antigen; n=2;
Cryptosporidium|Rep: Proliferating cell nuclear antigen
- Cryptosporidium hominis
Length = 261
Score = 90.6 bits (215), Expect = 4e-17
Identities = 38/77 (49%), Positives = 56/77 (72%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL + + KK+ EA+K+L DCD +G+ LQAMD+SHV+LVSL ++ D F+ Y
Sbjct: 1 MFEARLQNAMLFKKIAEALKELCHDINIDCDSDGLHLQAMDSSHVALVSLNIQPDAFEHY 60
Query: 200 RCDRNISMGMNLGSMSK 250
RCDR + +G+++ +SK
Sbjct: 61 RCDRPVVLGLDMQQLSK 77
Score = 62.1 bits (144), Expect = 1e-08
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +1
Query: 268 DKDT-VTIKA-QDNADN-VTFVFESPNQEKVSDYE--MKLMNLDLEHLGIPETEYSCTIR 432
DKDT +T+K DN DN +T FE N +S E ++LM+++ EH+ IPE EY C +
Sbjct: 83 DKDTSMTLKKYDDNEDNRITMCFED-NSGILSSKECILRLMDIEQEHISIPEEEYECNVT 141
Query: 433 MPSSEFARICRDLSQFGESMVISCTKK 513
MPS+ F I RD+S G+ + + + K
Sbjct: 142 MPSNLFQSIVRDMSGIGDEVSLEISGK 168
Score = 36.3 bits (80), Expect = 0.81
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
A +YL+YFTKA+ LS V +S+S VPL +++
Sbjct: 210 ALRYLSYFTKASPLSTTVNISISKGVPLRLQF 241
>UniRef50_P61074 Cluster: Proliferating cell nuclear antigen; n=8;
Aconoidasida|Rep: Proliferating cell nuclear antigen -
Plasmodium falciparum (isolate 3D7)
Length = 274
Score = 90.6 bits (215), Expect = 4e-17
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EA+L +SILKK+ E IKDL+ A D D++G++LQA+D +HVSLVSL L GF Y
Sbjct: 1 MLEAKLNNASILKKLFECIKDLVNDANVDADESGLKLQALDGNHVSLVSLHLLDSGFSHY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDR +G+N+ S++K+
Sbjct: 61 RCDRERVLGVNIASLNKV 78
Score = 67.7 bits (158), Expect = 3e-10
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETE--YSCTI 429
K G ++V I ++D+ DN+ FVFE+ ++KV+++ +KLM+++L+ L IP+ E + +
Sbjct: 80 KLCGANESVVISSKDDEDNLNFVFENNKEDKVTNFSLKLMSIELDSLNIPDCEEGFDAEV 139
Query: 430 RMPSSEFARICRDLSQFGESMVI 498
+ S E I R+LS+F +++ I
Sbjct: 140 ELSSKELTNIFRNLSEFSDTVFI 162
>UniRef50_O02115 Cluster: Proliferating cell nuclear antigen; n=6;
Eukaryota|Rep: Proliferating cell nuclear antigen -
Caenorhabditis elegans
Length = 229
Score = 87.8 bits (208), Expect = 2e-16
Identities = 37/89 (41%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +1
Query: 247 KDSKCAGDKDTVTIKAQDN-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSC 423
K KCA + DT +K ++N D++ F F P ++K D +K+M++D EHLGIP+ +Y+
Sbjct: 43 KALKCANNDDTCMLKYEENEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAV 102
Query: 424 TIRMPSSEFARICRDLSQFGESMVISCTK 510
MP+ EF + C+DLS F +S+ I+ TK
Sbjct: 103 VCEMPAGEFQKTCKDLSTFSDSLNITATK 131
Score = 58.4 bits (135), Expect = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2
Query: 122 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSK 250
+ LQAMD+SHV+LVSL L FD YRCDR I++G++L +MSK
Sbjct: 1 MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSK 43
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/32 (62%), Positives = 27/32 (84%)
Frame = +2
Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
+Y+N FTKAT+LS +V+LS+ DVP+VVEY I
Sbjct: 177 KYMNQFTKATALSDRVRLSLCNDVPVVVEYPI 208
>UniRef50_Q9NGR7 Cluster: Proliferating cell nuclear antigen 1; n=1;
Toxoplasma gondii|Rep: Proliferating cell nuclear
antigen 1 - Toxoplasma gondii
Length = 316
Score = 87.4 bits (207), Expect = 3e-16
Identities = 37/78 (47%), Positives = 58/78 (74%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EA+L +S+L+++ E+IKD+++ DCD+ G++LQAMD+SHV+LV+L L GF +
Sbjct: 1 MLEAKLQHASVLRRLFESIKDMVSDVNLDCDETGLRLQAMDSSHVALVALKLDDAGFVHF 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDR +G+NL S+ K+
Sbjct: 61 RCDRERLLGLNLASVCKV 78
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +1
Query: 211 EHLNGHESRQHVKDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLE 390
E L G K K + D+ +I+ ++++D VTFVFE+ EK+S + ++LM +D +
Sbjct: 65 ERLLGLNLASVCKVFKLCSNADSCSIQNEEDSDTVTFVFENEADEKLSSFSLRLMAIDQD 124
Query: 391 HLGIP--ETEYSCTIRMPSSEFARICRDLSQFGESMVISCTK 510
L +P ET + T+ M + EFA + R + +F +S+ + K
Sbjct: 125 ALRVPEDETAHDVTVTMSAREFANVVRIMGEFSDSVRVEVDK 166
Score = 34.7 bits (76), Expect = 2.5
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLNYF KA S+S V LS++ P+ V + I
Sbjct: 210 AVKYLNYFAKAASVSSSVTLSLTDQNPIEVRFDI 243
>UniRef50_UPI000049949B Cluster: proliferating cell nuclear antigen;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: proliferating
cell nuclear antigen - Entamoeba histolytica HM-1:IMSS
Length = 262
Score = 85.0 bits (201), Expect = 2e-15
Identities = 36/82 (43%), Positives = 57/82 (69%)
Frame = +2
Query: 23 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYR 202
F A+ +++ K+V+E++K + + FDC D GI +Q MDNSHVSLVSL + D FD+++
Sbjct: 4 FHAKFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQ 63
Query: 203 CDRNISMGMNLGSMSKIPNVLE 268
C + I++G+NL +SKI L+
Sbjct: 64 CLKPITLGINLTHLSKILKALD 85
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 241 HVKDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYS 420
H+ A D D I D+ S K + + L++++ E + IPE +
Sbjct: 76 HLSKILKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVDIEAESVEIPELQSD 135
Query: 421 CTIRMPSSEFARICRDLSQFG-ESMVISCTKKE 516
I + S+EF +I +D S G +S+ I CTK E
Sbjct: 136 AIITLSSAEFLKITKDFSALGDDSITIGCTKNE 168
>UniRef50_A0BN24 Cluster: Proliferating cell nuclear antigen; n=4;
Paramecium tetraurelia|Rep: Proliferating cell nuclear
antigen - Paramecium tetraurelia
Length = 259
Score = 84.6 bits (200), Expect = 2e-15
Identities = 36/86 (41%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADN-VTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIR 432
KC+G+ D +T++ Q+ ++F FES N ++S++++ LM+LD E LG+P+T+YS I+
Sbjct: 80 KCSGNDDQITLRTQEEEPTTLSFTFESKN--RISEFQLNLMSLDQEQLGVPDTDYSSVIK 137
Query: 433 MPSSEFARICRDLSQFGESMVISCTK 510
MPS+EF +ICR+L E++ I +K
Sbjct: 138 MPSNEFTKICRELGNINEAIGIETSK 163
Score = 81.8 bits (193), Expect = 2e-14
Identities = 35/78 (44%), Positives = 55/78 (70%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEA+ + KK++EAIK+L+ + + GI LQAMD SHV+LV+L L GF KY
Sbjct: 1 MFEAKFEDGVLFKKIVEAIKELVKNVNLEANGTGISLQAMDTSHVALVALQLNEKGFKKY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RC+++++MG+++ ++ KI
Sbjct: 61 RCEKSLTMGLSIENLQKI 78
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +Y N F KA +LSPQV LSMS D PLV+EY+I
Sbjct: 206 AVRYFNLFNKAAALSPQVILSMSQDQPLVIEYQI 239
>UniRef50_Q8WSN0 Cluster: Proliferating cell nuclear antigen 2; n=7;
Plasmodium|Rep: Proliferating cell nuclear antigen 2 -
Plasmodium falciparum
Length = 264
Score = 83.8 bits (198), Expect = 4e-15
Identities = 37/83 (44%), Positives = 57/83 (68%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFE R+ KK+ E +KD+ T+ +CD+NGI++Q+MD SHVSLV L + +D F Y
Sbjct: 1 MFECRI-DGQFFKKLFETLKDICTEVNLECDENGIKMQSMDCSHVSLVDLNIVSDFFQHY 59
Query: 200 RCDRNISMGMNLGSMSKIPNVLE 268
RCD+N +G+++ M KI +V++
Sbjct: 60 RCDKNCVLGISINFMLKILSVIK 82
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +1
Query: 268 DKDTVTIKAQDNADNVTF---VFESPNQEKVSD---YEMKLMNLDLEHLGIPETEYSCTI 429
+K TV + +DN ++ + + Q D ++KL+N EHL IP++EY C
Sbjct: 83 EKSTVFLFKEDNENDAVLNIGIIDEEEQSSADDSLEIQVKLINAQKEHLEIPQSEYHCQC 142
Query: 430 RMPSSEFARICRDLSQFGESMVISCTK 510
M S +F + L+ G+++ IS K
Sbjct: 143 TMKSKKFQEFTKYLNSIGDNVSISMKK 169
>UniRef50_A5Z0S2 Cluster: Proliferating cell nuclear antigen 2; n=1;
Phaseolus coccineus|Rep: Proliferating cell nuclear
antigen 2 - Phaseolus coccineus (Scarlet runner bean)
Length = 271
Score = 81.4 bits (192), Expect = 2e-14
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E R ++ S+LKKV E IK+ + F C GI +QAM NS++S+++L L + GF+ Y
Sbjct: 1 MLEVRFVQGSLLKKVSEIIKEFIHDTNFYCSSTGIIVQAM-NSNLSILALVLHSSGFEHY 59
Query: 200 RCDRNISMGMNLGSMSKIPN 259
RCD N SMGMNL SM ++ N
Sbjct: 60 RCDHNFSMGMNLYSMVELLN 79
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 9/93 (9%)
Frame = +1
Query: 262 AGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPE-----TEYSCT 426
A D +TIKA D D VTF FESP Q ++S++EM+L+++D I E EY
Sbjct: 81 ANGDDIITIKADDGGDTVTFTFESPRQNQISNFEMRLVDIDSPRYWIREDEAKYMEYLAM 140
Query: 427 IRMPSSEFARICRDLSQ----FGESMVISCTKK 513
++MPSS F ICR++S+ F +VI+ T+K
Sbjct: 141 VKMPSSIFDGICRNISRIDGMFDLDLVITVTQK 173
>UniRef50_P15873 Cluster: Proliferating cell nuclear antigen; n=11;
Saccharomycetales|Rep: Proliferating cell nuclear
antigen - Saccharomyces cerevisiae (Baker's yeast)
Length = 258
Score = 81.4 bits (192), Expect = 2e-14
Identities = 33/86 (38%), Positives = 59/86 (68%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
+C + DT+T+ A + D++ +FE ++++++Y +KLM++D + L I E +Y T+ +
Sbjct: 80 RCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSL 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PSSEF++I RDLSQ +S+ I TK+
Sbjct: 140 PSSEFSKIVRDLSQLSDSINIMITKE 165
Score = 74.9 bits (176), Expect = 2e-12
Identities = 32/78 (41%), Positives = 52/78 (66%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M EA+ +S+ K++++ KD + F C ++GI QA+D+S V LVSL + + F +Y
Sbjct: 1 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCD +++GM+L S+SKI
Sbjct: 61 RCDHPVTLGMDLTSLSKI 78
>UniRef50_Q98SC0 Cluster: Proliferating cell nuclear antigen; n=1;
Guillardia theta|Rep: Proliferating cell nuclear antigen
- Guillardia theta (Cryptomonas phi)
Length = 258
Score = 78.2 bits (184), Expect = 2e-13
Identities = 35/78 (44%), Positives = 57/78 (73%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M A+L +S+LKK+++A+KDL++ A + ++G+ LQAMD+SHVSLVSL + + F+ Y
Sbjct: 1 MLRAKLSSNSLLKKIVDAVKDLISDANIEFTNSGLSLQAMDSSHVSLVSLIIPPEEFEVY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
+C++ S+G+NL KI
Sbjct: 61 QCEKIQSLGINLNWFYKI 78
Score = 68.9 bits (161), Expect = 1e-10
Identities = 27/85 (31%), Positives = 58/85 (68%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCA ++D+V I ++N + +TF+F + E+ S+++++L+ ++ E LGIPET YS + +
Sbjct: 80 KCATNEDSVEIIYKNNENFITFLFRNEANERSSEFQLRLLEINNETLGIPETIYSAVVTL 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
+ E+ R+C ++ G+++ +S ++
Sbjct: 140 TAVEYKRVCSEMLTIGDTVYLSISE 164
Score = 37.9 bits (84), Expect = 0.26
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
A +YLN F KA LS +V L MS DVPL +E+
Sbjct: 209 ALRYLNTFAKAVPLSDKVTLKMSKDVPLQLEF 240
>UniRef50_A7AUH5 Cluster: Proliferating cell nuclear antigen; n=3;
Piroplasmida|Rep: Proliferating cell nuclear antigen -
Babesia bovis
Length = 264
Score = 76.6 bits (180), Expect = 6e-13
Identities = 33/78 (42%), Positives = 51/78 (65%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFE RL L+++ EA++++ + DC ++G+ +QAMDNSH+SL+ L L D F Y
Sbjct: 1 MFECRL-DGMFLRRLFEALREICNDVSIDCSEDGLSMQAMDNSHISLIHLCLAPDFFQLY 59
Query: 200 RCDRNISMGMNLGSMSKI 253
RCD ++G+N+ M KI
Sbjct: 60 RCDTPCTLGLNISFMLKI 77
Score = 43.6 bits (98), Expect = 0.005
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +1
Query: 289 KAQDNADNVTFV--FESPNQEKVS----DYEMKLMNLDLEHLGIPETEYSCTIRMPSSEF 450
+ D+ D V FV E+ ++ + ++K+++++ EHL IP+ EY+C M S F
Sbjct: 91 RGDDSEDPVLFVRIIEAGGYDEAESDALEAQVKMIDVEREHLDIPDCEYTCKCVMNSRRF 150
Query: 451 ARICRDLSQFGESMVISCTK 510
+ L G+++VIS K
Sbjct: 151 QEFAKYLHSIGDTVVISMNK 170
Score = 33.5 bits (73), Expect = 5.7
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
A +YL F+KAT+L+ V +++SA +PL V++
Sbjct: 208 ATRYLVLFSKATALAQDVSINLSAGIPLSVKF 239
>UniRef50_A7AVH8 Cluster: Proliferating cell nuclear antigen 1; n=1;
Babesia bovis|Rep: Proliferating cell nuclear antigen 1
- Babesia bovis
Length = 277
Score = 73.3 bits (172), Expect = 6e-12
Identities = 30/77 (38%), Positives = 51/77 (66%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E +L + +L+++ + ++D+++ D D G+ LQA+D +HV+LV L L GF Y
Sbjct: 1 MLELKLNHAVVLRRIFDCMRDIISDGNIDFDATGMSLQALDGNHVALVHLKLHESGFSLY 60
Query: 200 RCDRNISMGMNLGSMSK 250
RCDR ++G+NL S++K
Sbjct: 61 RCDRPRALGINLNSVTK 77
Score = 59.7 bits (138), Expect = 8e-08
Identities = 27/84 (32%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +1
Query: 247 KDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPE-TE-YS 420
K K + D+V I++++ D ++F+FE+ ++V + +KLM+++ + L IPE TE Y
Sbjct: 77 KAFKSCSNHDSVLIQSEEEKDYISFIFENNVDDRVMSFSLKLMSIEQDALSIPENTEGYD 136
Query: 421 CTIRMPSSEFARICRDLSQFGESM 492
I + S E A IC+ +++F +++
Sbjct: 137 AEITLGSKELANICKQMNEFSDTL 160
>UniRef50_A2F7D4 Cluster: Proliferating cell nuclear antigen,
putative; n=1; Trichomonas vaginalis G3|Rep:
Proliferating cell nuclear antigen, putative -
Trichomonas vaginalis G3
Length = 264
Score = 68.9 bits (161), Expect = 1e-10
Identities = 29/78 (37%), Positives = 51/78 (65%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E ++S KK+++++K L+ +F C +G+ LQAMD SHVSL+S++L AD F+ Y
Sbjct: 1 MVEIVFEQASFFKKIIDSLKGLVEDISFKCTSDGMDLQAMDISHVSLISISLPADIFNTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
C +++ N+ ++K+
Sbjct: 61 NCSEEMNLAFNVDVLNKV 78
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/85 (22%), Positives = 47/85 (55%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
K A D + I + +++T + +++K + + +K ++++ + + IPE Y + +
Sbjct: 80 KSASTDDYLKISTEKPNEDITIQLSTQSEDKNTRFNLKPVDINGDAVSIPEHIYKAKLSL 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
S+ F ++ R LS+ +S+ + CT+
Sbjct: 140 SSNAFNQLIRSLSEVNDSVAVRCTE 164
>UniRef50_O10308 Cluster: Probable DNA polymerase sliding clamp;
n=4; Nucleopolyhedrovirus|Rep: Probable DNA polymerase
sliding clamp - Orgyia pseudotsugata multicapsid
polyhedrosis virus (OpMNPV)
Length = 249
Score = 63.7 bits (148), Expect = 5e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +2
Query: 26 EARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRC 205
EA ++ + ++ A++ LLT ATFDCD +G++L ++D V+L L LR GF +Y C
Sbjct: 2 EATFATAAAFQSIVGALRGLLTHATFDCDAHGMRLHSLDVERVALADLRLRRAGFARYAC 61
Query: 206 DRNISMGMNLGSMSKI 253
+R +S + + + KI
Sbjct: 62 ERKLSFSVPVRGLVKI 77
Score = 50.8 bits (116), Expect = 4e-05
Identities = 24/84 (28%), Positives = 44/84 (52%)
Frame = +1
Query: 244 VKDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSC 423
VK + A +T++ D V +E+ + + ++LD + LG+P+ EY+C
Sbjct: 75 VKIVRTADPSAPLTMRVAARDDRVRLAYETAR--RAVSCTLAQISLDADRLGVPDKEYTC 132
Query: 424 TIRMPSSEFARICRDLSQFGESMV 495
+ +PS+E R C DL++ G + V
Sbjct: 133 VLAVPSAELTRACADLARLGATTV 156
Score = 33.1 bits (72), Expect = 7.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
AC YLN +A++LS V + M A +PL + +R+
Sbjct: 194 ACCYLNKLARASALSETVDVCMDASMPLRLRFRL 227
>UniRef50_Q4A3A5 Cluster: Putative proliferating cell nuclear
antigen; n=1; Emiliania huxleyi virus 86|Rep: Putative
proliferating cell nuclear antigen - Emiliania huxleyi
virus 86
Length = 259
Score = 63.3 bits (147), Expect = 6e-09
Identities = 28/78 (35%), Positives = 49/78 (62%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFE + + +L++V+E I +L+ + FDC +NG+ +QAMD++HV L ++ L DGF Y
Sbjct: 1 MFECKG-NAGLLRRVIECIAELIIECRFDCSENGMVVQAMDSTHVCLAAINLLRDGFLHY 59
Query: 200 RCDRNISMGMNLGSMSKI 253
C + + + + + KI
Sbjct: 60 DCSQPLVIDIPIDKFKKI 77
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 CAGDKDTVTIKAQDNADNVTFV-FESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
C+G DT T++ N +V + FE+P ++++D+E+ L++++ + + +PE E I+M
Sbjct: 80 CSGPDDTFTLRF--NGGSVLLIMFETPAHDRITDFELNLLDIEQDAMSVPELEPHLHIQM 137
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
S + RI +D FG+ + IS TK
Sbjct: 138 NSIDLKRIVKDYQTFGDVITISGTK 162
>UniRef50_A0RXH7 Cluster: DNA polymerase sliding clamp subunit; n=2;
Thermoprotei|Rep: DNA polymerase sliding clamp subunit -
Cenarchaeum symbiosum
Length = 248
Score = 61.7 bits (143), Expect = 2e-08
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +2
Query: 23 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYR 202
F A+ S LK ++ AI L+ +ATF GI + MD SHV+L+ ++ F+KY
Sbjct: 3 FSAKTSGSDDLKAIISAISTLVEEATFVATAEGITFRGMDPSHVALIDISWPNSAFEKYE 62
Query: 203 CDRNISMGMNLGSMSKI 253
CD NI G+ + +K+
Sbjct: 63 CDSNIKFGVRIDEFTKL 79
>UniRef50_Q9NGR6 Cluster: Proliferating cell nuclear antigen 2; n=1;
Toxoplasma gondii|Rep: Proliferating cell nuclear
antigen 2 - Toxoplasma gondii
Length = 272
Score = 59.3 bits (137), Expect = 1e-07
Identities = 23/59 (38%), Positives = 40/59 (67%)
Frame = +2
Query: 68 EAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSM 244
E +K+++T C+ +GI L +MD SHV++V + L D F KYRCDR + +G+++ ++
Sbjct: 1 ECLKEMVTDVNLVCNASGISLDSMDGSHVAVVDVRLAVDLFHKYRCDRPVQLGLSVPNL 59
Score = 39.1 bits (87), Expect = 0.11
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +1
Query: 298 DNADNVTFV-FESPNQEKVSDYEMKLMNLDLEHLGIPE-TEYSCTIRMPSSEFARICRDL 471
D D + + E P E++L++++ E L +PE TE+ T + S E + R L
Sbjct: 85 DEEDTILHINIEDPESGDTWSMEVRLLDVESEQLEVPEHTEHEATAVVRSKELQDLVRYL 144
Query: 472 SQFGESMVISC--TKKE*SSRQQATSAQRTSSWPRPLLLT 585
+ ES+V+ T + S+R + +A R P L+ T
Sbjct: 145 NSLSESIVVKMDKTHMQLSARGDSVAASRKMQ-PESLVCT 183
>UniRef50_Q84513 Cluster: Probable DNA polymerase sliding clamp 1;
n=3; Chlorovirus|Rep: Probable DNA polymerase sliding
clamp 1 - Paramecium bursaria Chlorella virus 1 (PBCV-1)
Length = 262
Score = 59.3 bits (137), Expect = 1e-07
Identities = 23/78 (29%), Positives = 48/78 (61%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
+F R L+ +++K + + +K++L GI++ A+D + VSLV L L ++ F++Y
Sbjct: 7 LFHIRTLQGNVIKSLFDCLKEILHDVMLSFGPTGIRISALDGAKVSLVHLKLDSESFEEY 66
Query: 200 RCDRNISMGMNLGSMSKI 253
+C+ +G+N+ +M K+
Sbjct: 67 KCEHTYELGVNVLNMFKL 84
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADN-VTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIR 432
+ AG D++ + N + + ++ + ++ + MKL+ +D + + + E+ I
Sbjct: 86 RSAGSHDSILFRYLKNDPHMIELTIQNFEKNSLTKFNMKLIEIDSVEIEVGDIEFDTIIV 145
Query: 433 MPSSEFARICRDLSQFGESMVI 498
MP++ F RICRD+S + +VI
Sbjct: 146 MPANYFQRICRDMSDITDHLVI 167
>UniRef50_Q8SRV9 Cluster: Proliferating cell nuclear antigen; n=1;
Encephalitozoon cuniculi|Rep: Proliferating cell nuclear
antigen - Encephalitozoon cuniculi
Length = 267
Score = 58.4 bits (135), Expect = 2e-07
Identities = 23/69 (33%), Positives = 44/69 (63%)
Frame = +2
Query: 47 SILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMG 226
S++K++LE++ +++ A + G+ +Q MD +HV+ + L + F KYRCDR + +G
Sbjct: 22 SLMKRILESLSEIVETADIKATEKGLSIQVMDVTHVAFADIFLSSTMFTKYRCDRELVIG 81
Query: 227 MNLGSMSKI 253
+ L ++ KI
Sbjct: 82 VQLKTLIKI 90
Score = 32.7 bits (71), Expect = 9.9
Identities = 17/79 (21%), Positives = 36/79 (45%)
Frame = +1
Query: 277 TVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFAR 456
T ++ D N+ + + V +++KL D E IPE ++ + +P+ EF
Sbjct: 101 TFRMECDDATTNLNI--RNTREGNVLSFKLKLFTSDSEAYNIPEFDFDASATIPADEFMY 158
Query: 457 ICRDLSQFGESMVISCTKK 513
+ + + FG+ + + K
Sbjct: 159 VPKLVGTFGDVVGVQAEGK 177
>UniRef50_A7KA48 Cluster: Putative uncharacterized protein Z788R;
n=3; Chlorovirus|Rep: Putative uncharacterized protein
Z788R - Chlorella virus ATCV-1
Length = 292
Score = 56.8 bits (131), Expect = 5e-07
Identities = 22/78 (28%), Positives = 49/78 (62%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
+F R ++ S++K + + +K++L + +G+++ AMD + VSLV + L A+ F++Y
Sbjct: 36 LFCIRTVQGSVIKSLFDTLKEILHDVSITFSPSGVKISAMDGAKVSLVHMKLDAEAFEEY 95
Query: 200 RCDRNISMGMNLGSMSKI 253
C+ +G+N+ ++ K+
Sbjct: 96 VCNNTYEIGVNVTNLFKL 113
Score = 40.3 bits (90), Expect = 0.049
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 KCAGDKDTVTIK-AQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIR 432
+ G +D++ + + N + ++ + + + +KL+ +D + I + E+ I
Sbjct: 115 RTTGSRDSIMFRYLKSNPHVLEITIQNFEKNSTTQFFLKLIEIDSACIDINDLEFDAIIS 174
Query: 433 MPSSEFARICRDLSQ 477
+PS+ F R+CRD+S+
Sbjct: 175 IPSNYFQRLCRDMSE 189
>UniRef50_Q6LWJ8 Cluster: DNA polymerase sliding clamp; n=8;
cellular organisms|Rep: DNA polymerase sliding clamp -
Methanococcus maripaludis
Length = 250
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 56 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNL 235
KKV+ A +L+ + F+ D+NGI+ AMD SHV+LVS+ + D F++Y D +G++L
Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDL 70
Query: 236 GSMSKI 253
++ KI
Sbjct: 71 EALKKI 76
>UniRef50_Q64803 Cluster: 20.6 kDa protein; n=1; Autographa
californica nucleopolyhedrovirus|Rep: 20.6 kDa protein -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 187
Score = 53.2 bits (122), Expect = 7e-06
Identities = 32/64 (50%), Positives = 36/64 (56%)
Frame = -3
Query: 207 SQRYLSKPSARRVSDTRDT*ELSIACN*IPLSSQSKVACVSRSLIASKTFFKIELRSKRA 28
S Y KPSA +DT T E+SI C P SQSKVAC SRSL S + FK A
Sbjct: 10 SHLYFLKPSACSCNDTSATCEVSITCMLTPRLSQSKVACGSRSLKVSTSLFKTAPVLNSA 69
Query: 27 SNMF 16
SN+F
Sbjct: 70 SNIF 73
>UniRef50_Q7QSA2 Cluster: Proliferating cell nuclear antigen; n=1;
Giardia lamblia ATCC 50803|Rep: Proliferating cell
nuclear antigen - Giardia lamblia ATCC 50803
Length = 299
Score = 53.2 bits (122), Expect = 7e-06
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +2
Query: 23 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYR 202
FE + LKK+ E + L+ D+G+ ++ +DN ++L+SL L F +R
Sbjct: 8 FELTFRDAGTLKKIFETLVPLVKDTPVSITDHGLSIETIDNGRIALISLHLPTQFFKNFR 67
Query: 203 CDRNISMGMNLGSMSKI 253
C+R S+G+ S K+
Sbjct: 68 CERACSLGVRTASFLKV 84
>UniRef50_O27367 Cluster: DNA polymerase sliding clamp; n=3;
Methanobacteriaceae|Rep: DNA polymerase sliding clamp -
Methanobacterium thermoautotrophicum
Length = 244
Score = 52.8 bits (121), Expect = 9e-06
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MF+A L +IL+ +AI ++ + G++L A+D SH++ V L L+A+ FD+Y
Sbjct: 1 MFKAELNDPNILRTSFDAISSIVDEVQIQLSAEGLRLDALDRSHITYVHLELKAELFDEY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
CD + ++ + K+
Sbjct: 61 VCDEPERINVDTEELMKV 78
>UniRef50_Q3LWE0 Cluster: Proliferating cell nuclear antigen; n=1;
Bigelowiella natans|Rep: Proliferating cell nuclear
antigen - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 258
Score = 51.6 bits (118), Expect = 2e-05
Identities = 31/117 (26%), Positives = 59/117 (50%)
Frame = +1
Query: 244 VKDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSC 423
+K K + ++D+V +K + + + VFE+ + ++++YE+ L E + +P +Y
Sbjct: 76 IKALKTSTNEDSVMMKYDETTNFFSLVFENKDS-RIAEYELNLFKSIKEKITVPVDKYDA 134
Query: 424 TIRMPSSEFARICRDLSQFGESMVISCTKKE*SSRQQATSAQRTSSWPRPLLLTKRK 594
TI M S E ++ +DL G+ +VI+ + TS + + LTKRK
Sbjct: 135 TISMNSLELTKLAKDLINVGDIVVINIHPGVVVFTAKGTSGRAIIIYKNTNNLTKRK 191
Score = 49.2 bits (112), Expect = 1e-04
Identities = 17/48 (35%), Positives = 39/48 (81%)
Frame = +2
Query: 59 KVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYR 202
K+ E++KDLL+++TF+ +N + +Q++D+SH++L+ + ++AD F+ ++
Sbjct: 14 KLFESMKDLLSESTFEFKENFLTIQSIDHSHITLLEVDIQADYFENFK 61
>UniRef50_Q4JAI6 Cluster: DNA polymerase sliding clamp 1; n=6;
Sulfolobaceae|Rep: DNA polymerase sliding clamp 1 -
Sulfolobus acidocaldarius
Length = 247
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Frame = +2
Query: 53 LKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMN 232
LK ++E + + + F+ +GI+L A+D +HVSL+++ L + F +Y + G N
Sbjct: 11 LKNIVETLTKFIDEGLFEIGQDGIRLVAVDKAHVSLINIELYKELFKEYEVEDEFKFGFN 70
Query: 233 LGSMSKIPNVL----EIRIQLQ*KHRIMLTM 313
++KI ++ EI I+ R+ +T+
Sbjct: 71 SQYLAKILSIAKRKEEISIESDSPERVKITL 101
>UniRef50_A4YIY6 Cluster: DNA polymerase sliding clamp; n=1;
Metallosphaera sedula DSM 5348|Rep: DNA polymerase
sliding clamp - Metallosphaera sedula DSM 5348
Length = 245
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +2
Query: 56 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNL 235
K V+EA+ L+ + TF +G+ + A+D +H+SL+ L + F+++ + G N
Sbjct: 12 KTVIEALSKLIDEVTFTFTSSGLDVVAVDRAHISLIKLHFPKEAFEEFDVEDQFRFGFNT 71
Query: 236 GSMSKI 253
M K+
Sbjct: 72 QYMLKV 77
>UniRef50_O73947 Cluster: DNA polymerase sliding clamp; n=7;
Thermococcaceae|Rep: DNA polymerase sliding clamp -
Pyrococcus furiosus
Length = 249
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +2
Query: 59 KVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLG 238
++++ L+ +A F ++GI ++AMD S V L+ L L + F KY ++G+N+
Sbjct: 15 QLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNMD 74
Query: 239 SMSKI 253
+ KI
Sbjct: 75 HLKKI 79
>UniRef50_O41056 Cluster: Probable DNA polymerase sliding clamp 2;
n=3; Chlorovirus|Rep: Probable DNA polymerase sliding
clamp 2 - Paramecium bursaria Chlorella virus 1 (PBCV-1)
Length = 264
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 14 INMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 193
+ MF + +KK+ DL+ A + G+ +Q+MD SHVSLV+L + F
Sbjct: 13 LQMFTIVSDAAETIKKLFVVFNDLVDIANLSFTNEGLSVQSMDTSHVSLVNLKIGKSYFK 72
Query: 194 KYRCDRNISMGMNLGSMSKI 253
Y + ++G+ + + +I
Sbjct: 73 DYSIAQEATVGIKISNFVRI 92
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/66 (22%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Frame = +1
Query: 313 VTFVFESPNQ----EKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQF 480
++F +++P++ + SD++MK ++++ E + IPE + I S+ + ++++ F
Sbjct: 103 ISFTYDNPDELIVKSEYSDFKMKTIDIETEEMEIPEMDIDVLIDADSNIIQKYLKNMAGF 162
Query: 481 GESMVI 498
G+++ I
Sbjct: 163 GDTVKI 168
>UniRef50_UPI00015BB244 Cluster: DNA polymerase sliding clamp
subunit A; n=1; Ignicoccus hospitalis KIN4/I|Rep: DNA
polymerase sliding clamp subunit A - Ignicoccus
hospitalis KIN4/I
Length = 248
Score = 42.7 bits (96), Expect = 0.009
Identities = 16/69 (23%), Positives = 39/69 (56%)
Frame = +2
Query: 44 SSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISM 223
+ I + +++AI ++ + G++++A+D + V ++ + + AD F +Y + S+
Sbjct: 8 AKIFQSLVDAIGKIVDEVALVAKPEGVEMKAIDPAQVVMIRIYIPADAFSEYEVEEEESL 67
Query: 224 GMNLGSMSK 250
G N+G + K
Sbjct: 68 GFNIGDILK 76
>UniRef50_A3DM84 Cluster: DNA polymerase sliding clamp; n=1;
Staphylothermus marinus F1|Rep: DNA polymerase sliding
clamp - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 248
Score = 42.7 bits (96), Expect = 0.009
Identities = 17/63 (26%), Positives = 38/63 (60%)
Frame = +2
Query: 65 LEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSM 244
+ AI ++ + + +NGI+L+A+D S + +V + +G +Y D+ ++G+N+ +
Sbjct: 15 MNAIGKIIDEGAYKIQENGIRLRAIDPSRIVMVDFYIPREGLLEYEFDKEETIGVNMEDL 74
Query: 245 SKI 253
+KI
Sbjct: 75 TKI 77
>UniRef50_A2BIU0 Cluster: DNA polymerase sliding clamp subunit; n=1;
Hyperthermus butylicus DSM 5456|Rep: DNA polymerase
sliding clamp subunit - Hyperthermus butylicus (strain
DSM 5456 / JCM 9403)
Length = 248
Score = 42.7 bits (96), Expect = 0.009
Identities = 17/64 (26%), Positives = 38/64 (59%)
Frame = +2
Query: 62 VLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGS 241
+L+AI ++ + NG++ A+D +HV+L+ + L + F +Y + + +G N+ +
Sbjct: 17 MLDAISKIVDELAMTITPNGVKAIALDPAHVALMVMELPPESFIEYEVEDEVKLGFNVAN 76
Query: 242 MSKI 253
++KI
Sbjct: 77 IAKI 80
>UniRef50_A2BN98 Cluster: DNA polymerase sliding clamp B2; n=1;
Hyperthermus butylicus DSM 5456|Rep: DNA polymerase
sliding clamp B2 - Hyperthermus butylicus (strain DSM
5456 / JCM 9403)
Length = 246
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 ILKKVLEAIKDLLTQATFDCD-DNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMG 226
I + ++ AI ++ + F D + G +AMD SHV ++++ D F+ + D + +G
Sbjct: 10 IWRYIVSAISKVIEEGVFVVDPEEGFLFRAMDPSHVIMLNMRFPRDSFEVFEVDSKVELG 69
Query: 227 MNLGSMSKI 253
+N ++K+
Sbjct: 70 VNFEDVAKV 78
>UniRef50_Q9HJQ0 Cluster: DNA polymerase sliding clamp; n=5;
Thermoplasmatales|Rep: DNA polymerase sliding clamp -
Thermoplasma acidophilum
Length = 246
Score = 41.5 bits (93), Expect = 0.021
Identities = 14/67 (20%), Positives = 40/67 (59%)
Frame = +2
Query: 53 LKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMN 232
LK++ + + ++++A F D+NG+ + A+D +HV+++ L + + F ++ D + ++
Sbjct: 11 LKEITDLLSTIVSEAKFRVDENGMSVTAVDPAHVAMIRLEVPKEAFVEFHTDGQEEIALD 70
Query: 233 LGSMSKI 253
+ + +
Sbjct: 71 IDRLKSV 77
>UniRef50_A3HAI1 Cluster: DNA polymerase sliding clamp; n=1;
Caldivirga maquilingensis IC-167|Rep: DNA polymerase
sliding clamp - Caldivirga maquilingensis IC-167
Length = 297
Score = 39.9 bits (89), Expect = 0.065
Identities = 17/65 (26%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 VLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY-RCDRNISMGMNLG 238
+++A+ L+ ++ +G++L+A+D S ++V L + FD+Y +++I++G+N
Sbjct: 64 IMDAVAVLVEESALTVTKDGVKLRALDPSRTAMVDLYMPRTAFDEYPDVEQDINIGVNFS 123
Query: 239 SMSKI 253
+ KI
Sbjct: 124 EVKKI 128
>UniRef50_A7K9E0 Cluster: Putative uncharacterized protein Z530L;
n=1; Chlorella virus ATCV-1|Rep: Putative
uncharacterized protein Z530L - Chlorella virus ATCV-1
Length = 261
Score = 38.7 bits (86), Expect = 0.15
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 50 ILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGM 229
I++K L + +L + G+++ AMD HVSL ++ FD Y + +G+
Sbjct: 25 IMRKALALLSELSDDVNITFAEQGMKIVAMDTGHVSLTAVKFAKGMFDVYSLGKETVIGV 84
Query: 230 NLGSMSKI 253
+ ++ K+
Sbjct: 85 KVSNLVKV 92
>UniRef50_A7IV77 Cluster: Putative uncharacterized protein M697L;
n=2; Paramecium bursaria Chlorella virus A1|Rep:
Putative uncharacterized protein M697L - Chlorella virus
MT325
Length = 276
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 NINM-FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADG 187
N+N+ F+ + +KK+ + +L ++G+++Q MD SHV+L ++ +
Sbjct: 27 NMNLGFKVSCQDTDAVKKIFALLDELNDDVNLMFTEHGLKIQTMDTSHVALSTVKISKGF 86
Query: 188 FDKYRCDRNISMGMNLGSMSKI 253
F +Y + ++G+ + +M ++
Sbjct: 87 FTEYVVPQFTTIGIKISTMIRV 108
>UniRef50_Q7T6Y0 Cluster: Probable DNA polymerase sliding clamp;
n=1; Acanthamoeba polyphaga mimivirus|Rep: Probable DNA
polymerase sliding clamp - Mimivirus
Length = 464
Score = 37.5 bits (83), Expect = 0.35
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFE-SPNQEKVSDYEMKLMNLDL--EHLGIPETEYSCT 426
K D D + I + + ++ S N + + E++L +D+ + +P+TE+
Sbjct: 289 KMINDDDPIVIYMKKDIQGSLYIRSLSENNDNSEEREIELFLMDIINPEIPVPKTEFQNR 348
Query: 427 IRMPSSEFARICRDLSQFGESMVISCTKKE*SSRQQATSAQRTSSW 564
I M S +F IC+ LSQ + I+ E + Q+ + T ++
Sbjct: 349 ITMKSDKFHLICKHLSQNSTFVEITSINNEILFKGQSEGGKVTMTY 394
>UniRef50_Q8ZTY0 Cluster: DNA polymerase sliding clamp A; n=4;
Pyrobaculum|Rep: DNA polymerase sliding clamp A -
Pyrobaculum aerophilum
Length = 249
Score = 37.1 bits (82), Expect = 0.46
Identities = 15/64 (23%), Positives = 37/64 (57%)
Frame = +2
Query: 62 VLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGS 241
++++I L+ +A F ++G+ L+A+D S ++V L + + F+++ + G+N
Sbjct: 17 IIDSISVLVEEANFLIRNDGLYLRALDVSRTAMVDLAIPKESFEEFPEVEELRFGLNFKE 76
Query: 242 MSKI 253
+ K+
Sbjct: 77 LKKL 80
>UniRef50_A7JF77 Cluster: Putative uncharacterized protein; n=9;
Francisella tularensis|Rep: Putative uncharacterized
protein - Francisella tularensis subsp. novicida
GA99-3549
Length = 279
Score = 36.7 bits (81), Expect = 0.61
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 238 QHVKDSKCAGDKDTVTIKAQDNADNVTFV-FESPNQEKVSDYEMKLMNLDLEHLGIP 405
++V D C D + +K ++ N+T + F + NQEK+S + L+NLD+E +P
Sbjct: 68 KNVLDIGCGAGSDLLVVKKYNDKANLTGIDFGNWNQEKLSKNNINLINLDIEKDKLP 124
>UniRef50_Q74MV1 Cluster: DNA polymerase sliding clamp; n=2;
Nanoarchaeum equitans|Rep: DNA polymerase sliding clamp
- Nanoarchaeum equitans
Length = 249
Score = 36.7 bits (81), Expect = 0.61
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 53 LKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
LKK++ + DL+++ F + GI+L AMD + +++V ++ + F Y
Sbjct: 11 LKKIVPIVADLISEGQFVATEEGIKLVAMDPASIAMVIWEMKPEAFIDY 59
>UniRef50_Q8QNE7 Cluster: EsV-1-132; n=2; Phaeovirus|Rep: EsV-1-132
- Ectocarpus siliculosus virus 1
Length = 301
Score = 35.9 bits (79), Expect = 1.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 364 MKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTK 510
+KL++LD E + IP+ E+ + MPSSE ++ R++ + I T+
Sbjct: 165 IKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATR 213
>UniRef50_Q016T8 Cluster: Chromosome 06 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 06 contig 1, DNA
sequence - Ostreococcus tauri
Length = 101
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -3
Query: 117 LSSQSKVACVSRSLIASKTFFKIELRSKRASNM 19
+ S SK+A V+RSL S+TF +I KRASNM
Sbjct: 59 VGSASKLASVTRSLTESRTFLRIAPSVKRASNM 91
>UniRef50_Q7D6X4 Cluster: Substrate--CoA ligase, putative; n=13;
Actinomycetales|Rep: Substrate--CoA ligase, putative -
Mycobacterium tuberculosis
Length = 1168
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -1
Query: 212 SYRSGTCQSHQLGE*VTRETHESCP*PVTEFHC 114
SY +G S GE + RE HE C PVT F C
Sbjct: 941 SYANGYANSKWAGEVLLREAHEQCGLPVTVFRC 973
>UniRef50_Q1V1W0 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Candidatus Pelagibacter ubique
HTCC1002
Length = 457
Score = 35.1 bits (77), Expect = 1.9
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = -3
Query: 420 AVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKNKCDIVSIILCFYCNCILISSTFGIFDM 241
++++ N FKI++ L +I FLL + L N + +I+L F N I F IFD+
Sbjct: 148 SIYAAHNRYYFKIRLGYLSKIIETFLLFYCLYNNYNFETIVLYFLINKIFF-FIFIIFDI 206
Query: 240 LPRF--MPIEMFLSQRYL 193
+ + + + L ++Y+
Sbjct: 207 VKSYNWIKFQFKLEKKYI 224
>UniRef50_A7C6V8 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 161
Score = 34.3 bits (75), Expect = 3.3
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 44 SSILKKVLEAIKDLLTQA--TFDCDDNGIQLQAMDNSHVSLVSLTLRAD 184
S L+K+ ++DLLTQA T D + + L A++ + SL SLT + D
Sbjct: 53 SETLQKLTAKVRDLLTQALPTHDMEALSVSLDALEPTQTSLSSLTAQID 101
>UniRef50_Q9YEZ5 Cluster: DNA polymerase sliding clamp B2; n=1;
Aeropyrum pernix|Rep: DNA polymerase sliding clamp B2 -
Aeropyrum pernix
Length = 249
Score = 34.3 bits (75), Expect = 3.3
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 VLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYRC-DRNISMGMNLG 238
++ +I+ ++ + F G+ L+A+D SHV++V L F +Y ++ G++
Sbjct: 17 MVASIEKIIEEGVFVATGEGLSLRALDTSHVAMVDLYYPNTAFIEYDIGGESVEFGVSFD 76
Query: 239 SMSKI 253
+SK+
Sbjct: 77 LLSKV 81
>UniRef50_Q5UQH4 Cluster: Uncharacterized protein L823; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Uncharacterized
protein L823 - Mimivirus
Length = 323
Score = 33.9 bits (74), Expect = 4.3
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +2
Query: 17 NMFEARLLRSSILKKVLEAIKDLLTQATF---DCDDNG--IQLQAMDNSHVSLVSLTLRA 181
N+ E + +LKK+L I ++ ++ F + ++ G I + DN + L+ L L+
Sbjct: 68 NILEIVTTKIDVLKKILRLIGEVTSECQFSFQNVNEGGRIIVTELHDNKTI-LLKLVLKG 126
Query: 182 DGFDKYRCDRN 214
GFD Y+C ++
Sbjct: 127 TGFDFYKCSKS 137
>UniRef50_Q5JH70 Cluster: Oligosaccharyl transferase, STT3 subunit;
n=1; Thermococcus kodakarensis KOD1|Rep: Oligosaccharyl
transferase, STT3 subunit - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 1000
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 310 NVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSE 447
N T +FE+ N ++ D ++ + NL+++HL ET T+++P +E
Sbjct: 804 NGTLIFEAYNGTELVDRQVLVKNLNIDHLN--ETPVEVTVKIPQAE 847
>UniRef50_UPI00015A4CC8 Cluster: Subcommissural organ spondin; n=2;
Danio rerio|Rep: Subcommissural organ spondin - Danio
rerio
Length = 1194
Score = 33.1 bits (72), Expect = 7.5
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1
Query: 326 KTNVTLSALSCAFIVTVSLSPAHLESLTCCLDSCPLRCSYRSGT 195
+TN+T CA + PA L S TC SCPL C++ SGT
Sbjct: 791 ETNMTTDIRPCAQDCSDVSCPAGLVSHTCA--SCPLTCAHVSGT 832
>UniRef50_Q187F0 Cluster: Putative signaling protein precursor; n=2;
Clostridium difficile|Rep: Putative signaling protein
precursor - Clostridium difficile (strain 630)
Length = 502
Score = 33.1 bits (72), Expect = 7.5
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = -3
Query: 351 DFLLIWALKNKCDIVSIILCFYCNCILISSTFGIFDMLPRFMPIEMFLSQRYLSKPSARR 172
+F ++ K DI++II N L++ +FGI+++ + + + ++ + L+K S +
Sbjct: 170 NFNILLTYNKKEDIINIIKKIMANNELVNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKN 229
Query: 171 VSD 163
SD
Sbjct: 230 NSD 232
>UniRef50_Q4PID5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 828
Score = 33.1 bits (72), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 279 CILISSTFGIFDMLPRFMPIEMFLSQRYLSKP 184
C+L+ F I D+L + P E F++Q +L +P
Sbjct: 675 CVLVDGIFSISDLLKEYPPYEGFVAQAFLPQP 706
>UniRef50_P38947 Cluster: Succinate-semialdehyde dehydrogenase
[NAD(P)+]; n=4; Bacteria|Rep: Succinate-semialdehyde
dehydrogenase [NAD(P)+] - Clostridium kluyveri
Length = 472
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 310 NVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFAR 456
N V P +KVS + ++LMN +L+ LG PE + PS E A+
Sbjct: 130 NTIIVAPHPKAKKVSAHTVELMNAELKKLGAPENIIQ-IVEAPSREAAK 177
>UniRef50_Q8TWK3 Cluster: DNA polymerase sliding clamp; n=1;
Methanopyrus kandleri|Rep: DNA polymerase sliding clamp
- Methanopyrus kandleri
Length = 253
Score = 32.7 bits (71), Expect = 9.9
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 23 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKYR 202
F A + K A ++ +A +NGI +AMD SH+++ L + + FD+Y
Sbjct: 4 FRAYQEEARYFKYAFNAAGKVVEEAPLIVTENGIVSRAMDASHIAMAVLEMPWEMFDEYE 63
Query: 203 CDRN-ISMGMNLGSMSKI 253
+ + G+++ +++I
Sbjct: 64 PPSDELMYGLDMEEVTRI 81
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,410,737
Number of Sequences: 1657284
Number of extensions: 13666780
Number of successful extensions: 35062
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 33768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35050
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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