Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30888
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   113   3e-26
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    28   1.6  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   2.2  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    26   5.0  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    26   5.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   5.0  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   6.6  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   6.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.7  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  113 bits (272), Expect = 3e-26
 Identities = 47/78 (60%), Positives = 69/78 (88%)
 Frame = +2

Query: 20  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
           M EAR  ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60

Query: 200 RCDRNISMGMNLGSMSKI 253
           RCDRNI++G+NL ++SK+
Sbjct: 61  RCDRNIALGINLNALSKV 78



 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 41/86 (47%), Positives = 63/86 (73%)
 Frame = +1

Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
           +CA ++D VT+KA+D  + +  VFES   +++SDY++KLM++D EHLGIP+ EY  TI M
Sbjct: 80  RCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITM 139

Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
           P++EF RI RDL    +S+ I+ +K+
Sbjct: 140 PAAEFQRITRDLLTLSDSVTINASKE 165



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = +2

Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
           +YL  FTKAT L+ +V LSMS DVPL+VEY++
Sbjct: 210 KYLAQFTKATPLATRVTLSMSNDVPLLVEYKM 241



 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQXXXXXXXXXXXXXTLT 635
           KEGV+FS  GDIG+ +  L Q   +               TLT
Sbjct: 164 KEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLT 206


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 650 LNYFTKATSLS-PQVQLSMSADVPLVVEYRIP 742
           LNY T+A S+  P   +S S DVPL  E++IP
Sbjct: 711 LNYHTQAVSIHHPSFYISRS-DVPLEEEFQIP 741


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 260 HLESLTCCLDSCPLRCSYRSGTC 192
           +  SL+C  DSC + C    GTC
Sbjct: 432 NFSSLSCHSDSCKVSCQNEDGTC 454


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 131  QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKIPNVL 265
            + +D+SH  LV     A  F+ YRC +  SMG+  G +  + N L
Sbjct: 957  RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPL 999


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 382 DLEHLGIP-ETEYSCTIRMPSS 444
           +L  +G+P E EY C  R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 520 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 630
           S R+  TS +RT   P   +L ++++ ++L   +PS+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 520 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 630
           S R+  TS +RT   P   +L ++++ ++L   +PS+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 518 YSFFVHEITIDSPNCERSRQILANSELGMRIVQLYSVSGIPK 393
           YSFF   I I S +    R IL NSEL  R     S   + K
Sbjct: 770 YSFFKESIEIRSSHSVLLRTILKNSELCHRFFPSMSKKDLTK 811


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -1

Query: 518 YSFFVHEITIDSPNCERSRQILANSELGMRIVQLYSVSGIPK 393
           YSFF   I I S +    R IL NSEL  R     S   + K
Sbjct: 770 YSFFKESIEIRSSHSVLLRTILKNSELCHRFFPSMSKKDLTK 811


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 453  SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 322
            ++F  W +      +  NT + + Q+ +LH++++ F+L    KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 DSKCAGDKDTVTIKAQDNADNVTFVFESP 336
           D  C  D D + +K  D+  +  +V+ESP
Sbjct: 178 DKVCILDSDLLVLKNMDDIFDTPYVYESP 206


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 56  KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 166
           K+V  +  D+LTQ T  C D+ +++++       L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 511  SLCMKSPLILQTVRDPGRF*QIQNLACE*CSCIQSLEYLNVQDPNS 374
            SL MK P ++QT+R PG+  ++  L     S   SL  + +Q P S
Sbjct: 1114 SLRMKEPEVVQTIR-PGQ--EVSVLIFADTSATYSLSLITLQSPLS 1156


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 421 SCIQSLEYLNVQDPNS*ASSRNQR 350
           SC Q LE  N+ DP S  S  N R
Sbjct: 384 SCFQLLERYNLSDPTSDTSMTNVR 407


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 268 DKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 381
           D ++V  +A DN+D   FV E P +   SD ++K   L
Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,483
Number of Sequences: 5004
Number of extensions: 58227
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)