Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30888
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707... 130 2e-30
12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551 31 0.74
12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660 31 0.74
06_03_0444 + 20864183-20864436,20864831-20865818 30 2.3
11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360 29 3.9
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 29 3.9
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 28 6.9
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 28 9.1
01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768 28 9.1
>02_05_1136 +
34369994-34370312,34370398-34370550,34370648-34370745,
34371563-34371784
Length = 263
Score = 130 bits (313), Expect = 2e-30
Identities = 53/86 (61%), Positives = 74/86 (86%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
+CAG+ D +TIKA D +D VTF+FESPNQ+K++D+EMKLM++D EHLGIP++EY +RM
Sbjct: 80 RCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMDIDSEHLGIPDSEYQAIVRM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PSSEF+RIC+DLS G++++IS TK+
Sbjct: 140 PSSEFSRICKDLSSIGDTVIISVTKE 165
Score = 111 bits (267), Expect = 6e-25
Identities = 49/78 (62%), Positives = 65/78 (83%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E RL++ S+LKKVLEAI++L+T A FDC G LQAMD+SHV+LV+L LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+SMGMNL +M+K+
Sbjct: 61 RCDRNLSMGMNLNNMAKM 78
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +Y+N FTKA+ LS QV +S+S+++P+VVEY+I
Sbjct: 208 ALRYMNSFTKASPLSEQVTISLSSELPVVVEYKI 241
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
KEGVKFS GDIG+AN+ Q ++D+
Sbjct: 164 KEGVKFSTAGDIGTANIVCRQNKTVDK 190
>12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551
Length = 475
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -3
Query: 348 FLLIWALKNKC--DIVSIILCFYCNCILISSTFGIFDMLPRFMPIEMFLSQRYLSKPSAR 175
F L W C +V+++L F+ N + + + + F P+EM+++QR + + SAR
Sbjct: 379 FRLTWRSAFVCLTTVVAMLLPFFGNVVGLLGAVSFWPLTVYF-PVEMYIAQRGVPRGSAR 437
Query: 174 RVS 166
VS
Sbjct: 438 WVS 440
>12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660
Length = 475
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -3
Query: 348 FLLIWALKNKC--DIVSIILCFYCNCILISSTFGIFDMLPRFMPIEMFLSQRYLSKPSAR 175
F L W C +V+++L F+ N + + + + F P+EM+++QR + + SAR
Sbjct: 379 FRLTWRSAFVCLTTVVAMLLPFFGNVVGLLGAVSFWPLTVYF-PVEMYIAQRGVPRGSAR 437
Query: 174 RVS 166
VS
Sbjct: 438 WVS 440
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = -3
Query: 348 FLLIW--ALKNKCDIVSIILCFYCNCILISSTFGIFDMLPRFMPIEMFLSQRYLSKPSAR 175
F L+W A +++I++ F+ + + I + + L F P+EM++ QR L + SA+
Sbjct: 315 FRLVWRTAFVAVITLLAILMPFFNSILGILGSIAFWP-LTVFFPVEMYIRQRQLPRFSAK 373
Query: 174 RVSDTRDT*ELSIACN*IPLSSQSKVACVSRSLIASKTFFKIELRS 37
V+ LS+ C + +++ + A + L + KT+ + RS
Sbjct: 374 WVA----LQSLSLVCFLVTVAACA--ASIQGVLDSLKTYVPFKTRS 413
>11_01_0597 + 4769748-4770166,4770263-4770545,4770725-4771360
Length = 445
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -3
Query: 348 FLLIWALKNKC--DIVSIILCFYCNCILISSTFGIFDMLPRFMPIEMFLSQRYLSKPSAR 175
F L W C +VS++L F+ + + + + + F P+EM+++QR + + SAR
Sbjct: 349 FRLTWRTAFVCATTVVSMLLPFFGDVVGLLGAVSFWPLTVYF-PVEMYIAQRGVRRGSAR 407
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 253 SKCAGDKDTVTIKAQDNADNVTFVFESPNQEK 348
SK D D V + A+D +D + VF++ +Q+K
Sbjct: 647 SKTTADDDCVIVAAKDGSDYASSVFDTNSQQK 678
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 345 LLIWALKNKCDIVSIILCFYCNCILISSTFGIFDMLPRFMPIE 217
+L W + + + C YCN L+ ST+G F L + PIE
Sbjct: 104 VLSWVVFPCSKALMAVSCSYCNLPLLQSTYGSFMQLLQ-SPIE 145
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 259 CAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCT 426
C+ K++ I+ DN +V ESP+ ++ S KLM L+ I ET S T
Sbjct: 264 CSRLKNSGYIRTDDNLLDVLKHQESPSHQRASSVVAKLMGLEGTTPDIHETARSPT 319
>01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768
Length = 145
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 332 LSKTNVTLSALSCAFIVTVSLSPAHL 255
+ TN+ LS L AF++++SLSP L
Sbjct: 1 MQTTNLFLSVLEFAFLISLSLSPQSL 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,083
Number of Sequences: 37544
Number of extensions: 386761
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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