Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30888
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                     126   2e-29
SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 29   5.3  
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 29   5.3  
SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)            29   5.3  
SB_50445| Best HMM Match : PT (HMM E-Value=2)                          28   7.0  

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score =  126 bits (304), Expect = 2e-29
 Identities = 54/85 (63%), Positives = 69/85 (81%)
 Frame = +1

Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
           KCAG++D +TI A+D  D VTF FESPN+EK S+Y+MKLM++D EHLGIP+  Y   I+M
Sbjct: 41  KCAGNEDRITIHAEDTGDTVTFSFESPNEEKTSEYKMKLMDIDSEHLGIPDQTYDAVIKM 100

Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
           PS+EF RICRDLSQ G+S+ I+CTK
Sbjct: 101 PSAEFQRICRDLSQMGDSVQIACTK 125



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +2

Query: 137 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKI 253
           MD+SHV LVS+ L ADGFD YRCDR +S+GM    +SKI
Sbjct: 1   MDSSHVCLVSVQLNADGFDPYRCDRTLSIGMKTSLLSKI 39



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEY 733
           A +Y+N+F+KAT LS  V LS+  D+PLVVEY
Sbjct: 169 ALRYMNFFSKATPLSSSVTLSLKKDIPLVVEY 200



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
           K+G+ F+ +G+ GS  V L Q AS+D+
Sbjct: 125 KDGIDFTVSGESGSGKVHLKQNASVDK 151


>SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 256

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 205 R*EHLNGHESRQHVKDSKCA 264
           R  H+NGHE+R+ ++D K A
Sbjct: 120 RASHINGHEARERLRDKKIA 139


>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 556

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 205 R*EHLNGHESRQHVKDSKCA 264
           R  H+NGHE+R+ ++D K A
Sbjct: 426 RASHINGHEARERLRDKKIA 445


>SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 343 EKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEF 450
           E + + EMKL  LDLE++ IPE+  +     P+ +F
Sbjct: 496 ETLLNMEMKLRLLDLENISIPESPPAIPPEPPNYDF 531


>SB_50445| Best HMM Match : PT (HMM E-Value=2)
          Length = 206

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +1

Query: 328 ESPNQEKVSDYEMKLMNLDLEHL--GIPETEYSCTIRMPSSEFARICRDLSQFGESMVIS 501
           E  N++ +   E K+ N   +++  G P TE+ CT R+P        +  S    ++   
Sbjct: 5   EKCNEKSIIIKERKVNNSMKQNVPTGYPSTEHKCTNRVPKQPTQMYQQGTSTPNTNVPTR 64

Query: 502 CTKKE*SSRQQATSAQRTSSWPRPLLLTKRK 594
             K      QQ TS   T+  P   L T+ K
Sbjct: 65  VPKHRTQMYQQGTSTPNTNV-PTGYLNTEHK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,052,256
Number of Sequences: 59808
Number of extensions: 446454
Number of successful extensions: 1193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)