Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30888
(749 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15796-1|AAA35736.1| 261|Homo sapiens protein ( Human cyclin pr... 139 9e-33
J04718-1|AAA60040.1| 261|Homo sapiens PCNA protein. 139 9e-33
CR541799-1|CAG46598.1| 261|Homo sapiens PCNA protein. 139 9e-33
BC062439-1|AAH62439.1| 261|Homo sapiens proliferating cell nucl... 139 9e-33
BC000491-1|AAH00491.1| 261|Homo sapiens proliferating cell nucl... 139 9e-33
AL121924-4|CAC27344.1| 261|Homo sapiens proliferating cell nucl... 139 9e-33
AF527838-1|AAM78556.1| 261|Homo sapiens proliferating cell nucl... 139 9e-33
CR536501-1|CAG38740.1| 261|Homo sapiens PCNA protein. 136 8e-32
AY310163-1|AAP58730.1| 73|Homo sapiens proliferating cell nucl... 107 6e-23
AY310164-1|AAP58731.1| 73|Homo sapiens proliferating cell nucl... 106 7e-23
AY310162-1|AAP58729.1| 73|Homo sapiens proliferating cell nucl... 105 1e-22
AF042838-1|AAC97073.1| 1495|Homo sapiens MEK kinase 1 protein. 30 7.7
>M15796-1|AAA35736.1| 261|Homo sapiens protein ( Human cyclin
protein gene, complete cds. ).
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>J04718-1|AAA60040.1| 261|Homo sapiens PCNA protein.
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>CR541799-1|CAG46598.1| 261|Homo sapiens PCNA protein.
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 115 bits (277), Expect = 2e-25
Identities = 52/78 (66%), Positives = 67/78 (85%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFE RL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEGRLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>BC062439-1|AAH62439.1| 261|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>BC000491-1|AAH00491.1| 261|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>AL121924-4|CAC27344.1| 261|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>AF527838-1|AAM78556.1| 261|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 261
Score = 139 bits (337), Expect = 9e-33
Identities = 59/85 (69%), Positives = 74/85 (87%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFARICRDLS G+++VISC K
Sbjct: 140 PSGEFARICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>CR536501-1|CAG38740.1| 261|Homo sapiens PCNA protein.
Length = 261
Score = 136 bits (329), Expect = 8e-32
Identities = 58/85 (68%), Positives = 73/85 (85%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG++D +T++A+DNAD + VFE+PNQEKVSDYEMKLM+LD+E LGIPE EYSC ++M
Sbjct: 80 KCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTK 510
PS EFA ICRDLS G+++VISC K
Sbjct: 140 PSGEFACICRDLSHIGDAVVISCAK 164
Score = 117 bits (281), Expect = 5e-26
Identities = 53/78 (67%), Positives = 68/78 (87%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN++MG+NL SMSKI
Sbjct: 61 RCDRNLAMGVNLTSMSKI 78
Score = 54.4 bits (125), Expect = 4e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +YLN+FTKAT LS V LSMSADVPLVVEY+I
Sbjct: 208 ALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Score = 42.3 bits (95), Expect = 0.002
Identities = 15/27 (55%), Positives = 26/27 (96%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
K+GVKFSA+G++G+ N+KL+QT+++D+
Sbjct: 164 KDGVKFSASGELGNGNIKLSQTSNVDK 190
>AY310163-1|AAP58730.1| 73|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 73
Score = 107 bits (256), Expect = 6e-23
Identities = 48/72 (66%), Positives = 62/72 (86%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNL 235
RCDRN +MG+NL
Sbjct: 61 RCDRNPAMGVNL 72
>AY310164-1|AAP58731.1| 73|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 73
Score = 106 bits (255), Expect = 7e-23
Identities = 47/72 (65%), Positives = 62/72 (86%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KD + +A +D +G+ LQ+MD+SHVSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDRINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNL 235
RCDRN++MG+NL
Sbjct: 61 RCDRNLAMGVNL 72
>AY310162-1|AAP58729.1| 73|Homo sapiens proliferating cell nuclear
antigen protein.
Length = 73
Score = 105 bits (253), Expect = 1e-22
Identities = 47/72 (65%), Positives = 62/72 (86%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
MFEARL++ SILKKVLEA+KDL+ +A +D +G+ LQ+MD+S VSLV LTLR++GFD Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSQVSLVQLTLRSEGFDTY 60
Query: 200 RCDRNISMGMNL 235
RCDRN++MG+NL
Sbjct: 61 RCDRNLAMGVNL 72
>AF042838-1|AAC97073.1| 1495|Homo sapiens MEK kinase 1 protein.
Length = 1495
Score = 30.3 bits (65), Expect = 7.7
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Frame = +1
Query: 421 CTIRMPSSEFARICRDLSQFGESMVISCTKKE*SSRQQATSAQRTSSWPRPLLLTKRKRQ 600
CT+ + + LS E + + T+ T+ P+P++ TK +
Sbjct: 887 CTVHLEKTGKGLCATKLSASSEDISERLARISVGPSSSTTTTTTTTEQPKPMVQTKGRPH 946
Query: 601 SSLKWKSP-SL*RCLPVPQLFH*SYF--SQPSGAAVDVSRRSFGGGVP 735
S SP S L P L S S P+G A DVS+ G +P
Sbjct: 947 SQCLNSSPLSHHSQLMFPALSTPSSSTPSVPAGTATDVSKHRLQGFIP 994
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,762,688
Number of Sequences: 237096
Number of extensions: 2149769
Number of successful extensions: 4535
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4535
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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