Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30888
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    88   7e-18
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    29   2.7  
AF045639-1|AAC02565.1|  672|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 37/89 (41%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
 Frame = +1

Query: 247 KDSKCAGDKDTVTIKAQDN-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSC 423
           K  KCA + DT  +K ++N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+ 
Sbjct: 43  KALKCANNDDTCMLKYEENEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAV 102

Query: 424 TIRMPSSEFARICRDLSQFGESMVISCTK 510
              MP+ EF + C+DLS F +S+ I+ TK
Sbjct: 103 VCEMPAGEFQKTCKDLSTFSDSLNITATK 131



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/43 (60%), Positives = 34/43 (79%)
 Frame = +2

Query: 122 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSK 250
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSK 43



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +2

Query: 644 QYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
           +Y+N FTKAT+LS +V+LS+  DVP+VVEY I
Sbjct: 177 KYMNQFTKATALSDRVRLSLCNDVPVVVEYPI 208


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 211 EHLNGHESRQHVKDSKCAGDKDTVTIKAQDNADNVTFVF-ESPNQEKVSDYEMKLMN 378
           E +NG + +      + AGDK  +++    N   V F   E P +E+V D E + +N
Sbjct: 254 EKMNGEKKKIEKDKKRKAGDKADLSLDDGKNKKRVRFAMDEEPEEEEVEDEEQEDIN 310


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 363 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 271
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 244 VKDSKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSC 423
           +KD +  GD+    IK       VT   ++P QE    Y++   N    H    +  Y C
Sbjct: 39  LKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQEDQGVYKVTATNTHGSHSVEQQYIYKC 98

Query: 424 T 426
           T
Sbjct: 99  T 99


>AF045639-1|AAC02565.1|  672|Caenorhabditis elegans Hypothetical
           protein B0212.3 protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 471 LTVWRINGDFMHKEGVKFSATGDIGSANVKLAQTAS 578
           + VW ++ +F  +EG KFS +G     + KLA   S
Sbjct: 274 MRVWLVHNEFKRQEGRKFSKSGYAKRFHKKLAPNMS 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,169
Number of Sequences: 27780
Number of extensions: 337113
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)