Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30888
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P... 126 2e-29
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P... 126 2e-29
At2g36960.2 68415.m04533 myb family transcription factor contain... 31 1.1
At2g36960.1 68415.m04532 myb family transcription factor contain... 31 1.1
At1g22160.1 68414.m02770 senescence-associated protein-related s... 30 1.4
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.5
At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOA... 29 3.3
>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
(PCNA2) identical to SP|Q9ZW35 Proliferating cell
nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
nearly identical to SP|Q43124 Proliferating cell nuclear
antigen (PCNA) {Brassica napus}; contains Pfam profiles
PF00705: Proliferating cell nuclear antigen N-terminal
domain, PF02747: Proliferating cell nuclear antigen
C-terminal domain
Length = 264
Score = 126 bits (304), Expect = 2e-29
Identities = 53/86 (61%), Positives = 71/86 (82%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG+ D +TIKA D +D VTF+FESP Q+K++D+EMKLM++D EHLGIP+ EY +RM
Sbjct: 80 KCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PS EF+RIC+DLS G+++VIS TK+
Sbjct: 140 PSGEFSRICKDLSSIGDTVVISVTKE 165
Score = 116 bits (280), Expect = 1e-26
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E RL++ S+LKKVLEA+KDL+ A FDC G LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+SMGMNLG+MSK+
Sbjct: 61 RCDRNLSMGMNLGNMSKM 78
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +Y+N FTKAT LS V +S+S+++P+VVEY++
Sbjct: 208 ALRYMNSFTKATPLSETVTISLSSELPVVVEYKV 241
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
KEGVKFS GDIG+AN+ L Q ++D+
Sbjct: 164 KEGVKFSTAGDIGTANIVLRQNTTVDK 190
>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
(PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
nearly identical to SP|Q43124 Proliferating cell nuclear
antigen (PCNA) {Brassica napus}; contains Pfam profiles
PF00705: Proliferating cell nuclear antigen N-terminal
domain, PF02747: Proliferating cell nuclear antigen
C-terminal domain
Length = 263
Score = 126 bits (304), Expect = 2e-29
Identities = 53/86 (61%), Positives = 71/86 (82%)
Frame = +1
Query: 256 KCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRM 435
KCAG+ D +TIKA D D VTF+FESP Q+K++D+EMKLM++D EHLGIP+ EY +RM
Sbjct: 80 KCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRM 139
Query: 436 PSSEFARICRDLSQFGESMVISCTKK 513
PS+EF+RIC+DLS G+++VIS TK+
Sbjct: 140 PSNEFSRICKDLSSIGDTVVISVTKE 165
Score = 116 bits (279), Expect = 2e-26
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 20 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 199
M E RL++ S+LKKVLE+IKDL+ A FDC G LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 60
Query: 200 RCDRNISMGMNLGSMSKI 253
RCDRN+SMGMNLG+MSK+
Sbjct: 61 RCDRNLSMGMNLGNMSKM 78
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +2
Query: 638 ACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRI 739
A +Y+N FTKAT LS V +S+S+++P+VVEY++
Sbjct: 208 ALRYMNSFTKATPLSDTVTISLSSELPVVVEYKV 241
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 507 KEGVKFSATGDIGSANVKLAQTASIDQ 587
KEGVKFS GDIG+AN+ L Q ++D+
Sbjct: 164 KEGVKFSTAGDIGTANIVLRQNTTVDK 190
>At2g36960.2 68415.m04533 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 741
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 71 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 193
+I DLL++ D D +G+ A + SH L + +D FD
Sbjct: 529 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 569
>At2g36960.1 68415.m04532 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 743
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 71 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 193
+I DLL++ D D +G+ A + SH L + +D FD
Sbjct: 531 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 571
>At1g22160.1 68414.m02770 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 147
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +1
Query: 265 GDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSS 444
G + IK + + F P++++ SD++++L+N+D EH + + + S
Sbjct: 4 GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVD-EHRQVHQRLLDQRLLAMVS 62
Query: 445 EFARICRDLSQFGESMVISCT 507
R S + E + SC+
Sbjct: 63 PRGTQRRHSSDYSEDFLRSCS 83
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = -3
Query: 498 NHH*FSKL*EIPADSSKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKNK 319
+H FSKL +P S KF + +A L + + ++H L VI D LL A+
Sbjct: 355 DHPIFSKLLPVPFSSGKFFSADHLTAIGNCLKESTFCQPRVHSLWPVIVDMLLPEAVVQS 414
Query: 318 CDIVSI 301
D+VS+
Sbjct: 415 EDVVSV 420
>At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related similar to wax
synthase [Simmondsia chinensis] GI:5020219; contains
Pfam profile PF03062: MBOAT family
Length = 341
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 357 IRDFLLIWALKNKCDIVSIILCFYCNCILISSTFGIFDMLP---RFMPIEMFLSQRYLSK 187
+++F+++W I+S+ C+Y + + + +F +LP F + +F S + S
Sbjct: 5 LKNFIIVWISA----IISVSYCYYISANIKTGVLRLFSVLPICGLFFVLPLFFSSVHFSS 60
Query: 186 PSARRVSD 163
+A +S+
Sbjct: 61 STAFYLSE 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,057
Number of Sequences: 28952
Number of extensions: 309983
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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