Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30886
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 129 3e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 126 4e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.18
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.0
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 129 bits (312), Expect = 3e-31
Identities = 63/84 (75%), Positives = 68/84 (80%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P DV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133
Query: 430 HQPITEASYVNIPVIALCNTDSPL 501
Q I EAS+VNIPVIALC+TDS L
Sbjct: 134 AQAIKEASFVNIPVIALCDTDSIL 157
Score = 85.4 bits (202), Expect = 6e-18
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +2
Query: 59 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVV 238
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL + WEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 239 AIENP 253
IENP
Sbjct: 70 TIENP 74
Score = 56.0 bits (129), Expect = 4e-09
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = +3
Query: 510 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 632
D+AIP N K SIGL W+LLAREVLRLRG + R W+V+
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVM 201
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 126 bits (303), Expect = 4e-30
Identities = 62/99 (62%), Positives = 74/99 (74%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P DV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132
Query: 430 HQPITEASYVNIPVIALCNTDSPLRFGTLLSHATPSLPT 546
Q I EAS+VNIPVIALC+TDS +L+H ++PT
Sbjct: 133 AQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165
Score = 85.4 bits (202), Expect = 6e-18
Identities = 34/69 (49%), Positives = 52/69 (75%)
Frame = +2
Query: 47 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAA 226
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL + WEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 227 RAVVAIENP 253
R + IENP
Sbjct: 65 RVIATIENP 73
Score = 60.1 bits (139), Expect = 3e-10
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +3
Query: 510 DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 632
DIAIP N K SIGL+W+LLAREVLR+RG L R WDV+
Sbjct: 160 DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVM 200
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 394 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFGT 513
P L+++L+P ++ EA ++P I + +TD+ R T
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVT 219
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 549 IGLMWWLLAREVLRLRGVLPRDQRWD 626
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 444 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 277
S GL L R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 190 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 41
VD+ G I S I LE+N K GG F G F + E V + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 150 MSTNDVLMVPM*STCVVPGKNLFWLLVL 233
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,799
Number of Sequences: 5004
Number of extensions: 65108
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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