Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30886
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 126 1e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 126 1e-29
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 36 0.036
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 29 3.1
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 29 3.1
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 3.1
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.1
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 4.1
07_01_0903 - 7607588-7607953 28 7.1
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.1
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 9.4
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 9.4
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 126 bits (304), Expect = 1e-29
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E++ NIP IA C+TDSP+R+
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRY 160
Score = 90.2 bits (214), Expect = 1e-18
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +2
Query: 62 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVA 241
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL + WEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 242 IENP 253
IENP
Sbjct: 72 IENP 75
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 635
P + DI IP N K SIG ++WLLAR VL++RG + +WDV+V
Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMV 203
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 126 bits (304), Expect = 1e-29
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E++ NIP IA C+TDSP+R+
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRY 160
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/75 (57%), Positives = 54/75 (72%)
Frame = +2
Query: 29 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWE 208
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL + WE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 209 KLVLAARAVVAIENP 253
KL LAAR +VAIENP
Sbjct: 61 KLQLAARVIVAIENP 75
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 635
P + DI IP N K +SIG ++WLLAR VL++RG + +WDV+V
Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMV 203
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 35.5 bits (78), Expect = 0.036
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 196 SCLGKTCSGCSCCRSHREP-RDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQ 372
+C G+ SGC CR RD ++ R RAV AA + P R+TPG +
Sbjct: 51 ACRGRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHS 110
Query: 373 IQAAFREPRLLIVLD 417
RE IV D
Sbjct: 111 QARLVREMMKSIVAD 125
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 505 FGTLLSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 615
F ++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 69 FSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 505 FGTLLSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 615
F ++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 69 FSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 136 PDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSH 243
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 129 TFSAPRWVVAASILVTSSSLRASTSNP 49
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 270 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 362
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>07_01_0903 - 7607588-7607953
Length = 121
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 572 QQPPHQTNRVGRLGVAWDSNVPNLSG 495
QQPP Q ++G G D+NVP+ +G
Sbjct: 30 QQPPWQRRQMGGGGADADNNVPDQAG 55
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 172 WYPCDQLASCLGKTCSGCSCCRSHREP 252
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 126 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 13
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 316 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 489
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 490 DSPLR 504
+ P++
Sbjct: 330 EQPMQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,506,029
Number of Sequences: 37544
Number of extensions: 486454
Number of successful extensions: 1297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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