Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30886
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 158 3e-39
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.0
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035) 30 1.8
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 1.8
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.2
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.2
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.3
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 27 9.7
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 27 9.7
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 27 9.7
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 27 9.7
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 158 bits (384), Expect = 3e-39
Identities = 72/85 (84%), Positives = 78/85 (91%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P DV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP D
Sbjct: 71 PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130
Query: 430 HQPITEASYVNIPVIALCNTDSPLR 504
HQP+TEASYVNIPVIA CNTDSPLR
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLR 155
Score = 107 bits (257), Expect = 7e-24
Identities = 47/71 (66%), Positives = 58/71 (81%)
Frame = +2
Query: 41 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVL 220
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++ WEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 221 AARAVVAIENP 253
AAR +V IENP
Sbjct: 61 AARIIVTIENP 71
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVV 632
P + D+AIPCN K HSIGLM+WLLAREVLR+RG + R W+++
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIM 198
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 412 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 486 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 322
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)
Length = 396
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 85 HQNACCNHPSWGRKC*LPDGDLCLQ---TTC*WYPCDQLASCLGKTCSGCSCCRSHRE 249
H ++C N G++C +G C++ + C SC G+TC C RS R+
Sbjct: 126 HMSSCSNGCCLGQRC--LNGGTCVEHCEDPKKKFSCACTPSCSGRTCESCGTYRSCRD 181
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 543 HSIGLMWWLLAREVLRLRGVLP 608
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 116 GAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVAIENPVMCSSSHHGPSVSV 295
G EN+N ++ T V + D H R E ++ + E +C SS H P SV
Sbjct: 580 GEENINSKLRTVVINIKVDLCHQSICPRGRECIIGEDGNSTSCECSAVC-SSEHAPVCSV 638
Query: 296 LY 301
Y
Sbjct: 639 FY 640
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 486 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 328
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 447 SFICQHSCDCFVQHRLPTKIWDIAIPC 527
S +C C F+ HR K+W +PC
Sbjct: 2290 SAVCGQYCLFFLWHRTRNKLWKTLLPC 2316
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 486 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 328
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1275
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 206 EKLVLAARAVVAIENPVMCSSSHHGPSVSVL 298
+K+ LA RA VAI+ + C + +HG V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512
>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 206 EKLVLAARAVVAIENPVMCSSSHHGPSVSVL 298
+K+ LA RA VAI+ + C + +HG V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 27.9 bits (59), Expect = 7.3
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +1
Query: 271 SSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAA----FREPRLLIVLDPAQDHQP 438
S + GQ ++K++ G +A F + T ++ A F +L + AQDH
Sbjct: 1179 SDKDIGQNGLIKYSISNGN--LAAMFDVESATGRLIVAKSLDFETTQLYELTITAQDHGL 1236
Query: 439 ITEASYVNIPVIAL-CNTDSPL 501
I +S VN+ V L N ++PL
Sbjct: 1237 IPLSSTVNVTVNVLDVNDNAPL 1258
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 299 TAR*PKGRDEMTNTSRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRHRS 144
T+R R E + R RQHE+ RH++S H +H RH++
Sbjct: 51 TSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRSRHKT 101
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 267 HLITALRSACCTEVCRAHRCYAYCGAF 347
+ + + R + T++ R HRC YC F
Sbjct: 1549 YALVSPRESIATDIHRVHRCIGYCPQF 1575
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 637 STTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMS 509
+TT RWS+G TP ++ H I L+ HG S
Sbjct: 1397 TTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPS 1437
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 636 QPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 526
QP H ++ + A HH A LH P +TS + W C
Sbjct: 179 QPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
Length = 317
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 560 HQTNRVGRLGVAWDSNVPNLSGESVLHKAITGMLTYEASVMG 435
H++ + G+L W PN E+ HK M Y V+G
Sbjct: 9 HRSPQYGQLETGWHRAYPNSQLETGWHKVCPNMDAYIEEVLG 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,460,481
Number of Sequences: 59808
Number of extensions: 551118
Number of successful extensions: 1468
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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