Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30886
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 128 2e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 123 9e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 123 9e-29
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 33 0.12
At2g22340.1 68415.m02651 hypothetical protein 33 0.21
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.5
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 28 6.0
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta... 27 7.9
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 128 bits (310), Expect = 2e-30
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E + NIP+IA C+TDSP+RF
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRF 160
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +2
Query: 62 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVA 241
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL + WEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 242 IENP 253
IENP
Sbjct: 72 IENP 75
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 635
P + DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+V
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMV 203
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 123 bits (297), Expect = 9e-29
Identities = 55/86 (63%), Positives = 66/86 (76%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E + NIP IA C+TDSP+ F
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGF 161
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +2
Query: 74 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVAIENP 253
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL + W+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 635
P DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+V
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMV 204
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 123 bits (297), Expect = 9e-29
Identities = 55/86 (63%), Positives = 66/86 (76%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E + NIP IA C+TDSP+ F
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGF 161
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/60 (58%), Positives = 46/60 (76%)
Frame = +2
Query: 74 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVAIENP 253
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL + W+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV 635
P DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+V
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMV 204
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 394 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFGTLLSHATPS 537
P ++V D + I EAS + IPV+A+ + + PL F +++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 112 SWGRKC*LPDGDLCLQTTC*WYPCDQLASCLGKTCSGCSC 231
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 349 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 450
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/86 (24%), Positives = 43/86 (50%)
Frame = +2
Query: 32 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEK 211
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 212 LVLAARAVVAIENPVMCSSSHHGPSV 289
L+ AR + + + CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI5 DnaJ
homolog subfamily B member 10 Mus musculus ; contains
Pfam profile PF00226 DnaJ domain
Length = 347
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 238 SHREPRDVFVISSRPFGQRAVLKFAAHTGATPIA-GRFTPGAFTN-QIQAAFREPRLLIV 411
SHR R P QR V + H ++ R TP +T +I+ AFRE L
Sbjct: 261 SHRNQR---TNHQEPSDQRRVYPLSHHYSVLGLSRSRATP--YTEAEIKKAFREKALEFH 315
Query: 412 LDPAQDHQPITEASYVNI 465
D QD++ + EA + +
Sbjct: 316 PDQNQDNKIVAEAKFKEV 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,873,729
Number of Sequences: 28952
Number of extensions: 366878
Number of successful extensions: 884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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