Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30885
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   3.1  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   5.4  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.4  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.2  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   7.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.5  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +1

Query: 67  CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWLVP 192
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 276 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 377
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 69  QDTFEHRHFERTLRSVETHPGPLLSEG 149
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 1   GRWITWLAGR*RTQLTARH-SVNCRTHLNIDISNAHCGPWRHIQDHSCLRAGCIKNINH 174
           G WIT+   R     +A+H S NC +HL   + ++   P  +   H     G + + NH
Sbjct: 524 GAWITYHHRR-----SAKHPSCNCFSHLQTKLIDSGPKPANNSYQHQSNFIGVVISTNH 577


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 201 IRRVDAFRVTRSYSSLRVFFL 263
           IRRV+ ++ T    SLRV+F+
Sbjct: 560 IRRVEVYKATYPKRSLRVYFM 580


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 432 IHIHENCYAHAKHNARAREVRRDYENFEITIKH 334
           IHI+ +  A  KH  +  ++  D  + E++IK+
Sbjct: 90  IHINNSAVADTKHKPKIGDIAADDISNEVSIKN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,049
Number of Sequences: 5004
Number of extensions: 32775
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)