Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30885
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                32   0.34 
SB_59525| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   4.2  
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            27   7.4  

>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 213 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHXXXXXXXXX 34
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+H         
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 211

Query: 33  XXXREPSDPP 4
               EP DPP
Sbjct: 212 SSMHEPRDPP 221


>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 213 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHXXXXXXXXX 34
           Q  G R   E R +   F     QT ++L   P++A+CV+  D  +  A+H         
Sbjct: 65  QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 120

Query: 33  XXXREPSDPP 4
               EP DPP
Sbjct: 121 SSMHEPRDPP 130


>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 99  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 212
           +T+R V+T P  L +  RLH  H +HC     L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 99  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 212
           +TLR V+T P  L +  R H+ H +HC       +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247


>SB_59525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 117 PRTAMCVRNVDVQMCPAVHXXXXXXXXXXXXREPSDPP 4
           P++A+CV+  D  +  A+H             EP DPP
Sbjct: 6   PKSAICVQRFDDSLNSAIHTTYRTWLRSSSMHEPRDPP 43


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 79  LNIDISNAHCGPWRHIQDHSCLRAGCIKN 165
           L +D+ NA  GPW  I+ H C +  C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313


>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 112 PWRHIQDHSCLRAGCIKNI 168
           PWR+  DH CL+   I N+
Sbjct: 5   PWRNAADHHCLKTAIIFNV 23


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 99  RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 212
           +T+R+V+T P  L +  R H+   +HC       +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,609,724
Number of Sequences: 59808
Number of extensions: 270166
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)