Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30885
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    28   3.7  
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    28   3.7  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    28   4.9  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   6.5  
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 450 ETKTTKIHIHENCYAHAKHNA--RAREVRRDYENFEITIKHF*IRRR 316
           E++  KI  H+   +  + +A  R ++  + YEN E++IKH  + R+
Sbjct: 252 ESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRK 298


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 450 ETKTTKIHIHENCYAHAKHNA--RAREVRRDYENFEITIKHF*IRRR 316
           E++  KI  H+   +  + +A  R ++  + YEN E++IKH  + R+
Sbjct: 252 ESQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRK 298


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 468 RQQQNNETKTTKIHIHENCYAHAKHNARA 382
           ++Q+NN  K  + ++H+ C  +   NA+A
Sbjct: 198 QKQENNSKKLRQTNVHQQCLGNKSFNAQA 226


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -1

Query: 175 CD*CFLCSRPSD-RSGPGCVSTDRNVRSKC-----RCSNVSCSS 62
           C+ C   S   D  SGP C+  D     KC     +CS VSC S
Sbjct: 472 CEDCVNSSNCLDVESGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 183 PRNVINVF-YAAGPQTGVVLDVSPRTAMCVRNVDVQMCPA 67
           PR++IN+  Y+ GP    +LDV     +C     +  CP+
Sbjct: 627 PRSLINLSNYSGGPTPQELLDVIDDNDICCSTPSLSRCPS 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,946
Number of Sequences: 27780
Number of extensions: 198601
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)