Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30884
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   109   6e-25
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    26   5.5  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    26   5.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   5.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   7.3  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   7.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   9.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.7  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  109 bits (261), Expect = 6e-25
 Identities = 45/85 (52%), Positives = 68/85 (80%)
 Frame = +3

Query: 255 DRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLD 434
           DRNI++G+NL ++SK+L+CA ++D VT+KA+D  + +  VFES   +++SDY++KLM++D
Sbjct: 63  DRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMDID 122

Query: 435 LEHLGIPETEYSCTIRMPSSEFARI 509
            EHLGIP+ EY  TI MP++EF RI
Sbjct: 123 QEHLGIPDIEYDATITMPAAEFQRI 147



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 37/61 (60%), Positives = 53/61 (86%)
 Frame = +1

Query: 70  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 249
           M EAR  ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1   MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60

Query: 250 R 252
           R
Sbjct: 61  R 61



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 34/82 (41%), Positives = 46/82 (56%)
 Frame = +2

Query: 512 RDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTFA 691
           RDL    +S+ I+ +KEGV+FS  GDIG+ +  L Q   +               TLTF+
Sbjct: 149 RDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLTFS 208

Query: 692 CQYLNYFTKATSLSPQVQLSMS 757
            +YL  FTKAT L+ +V LSMS
Sbjct: 209 LKYLAQFTKATPLATRVTLSMS 230


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 19  LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 132
           L +  N+ +  IH  I+ +EAR++   IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 432 DLEHLGIP-ETEYSCTIRMPSS 494
           +L  +G+P E EY C  R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 570 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 680
           S R+  TS +RT   P   +L ++++ ++L   +PS+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 570 SSRQQATSAQRTSSWPRPLLLTKRKRQSSLKWKSPSL 680
           S R+  TS +RT   P   +L ++++ ++L   +PS+
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSI 128


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 503  SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 372
            ++F  W +      +  NT + + Q+ +LH++++ F+L    KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 169  GIQLQAMDNSHVSLVSLTLRADGFDKYRWIGTS 267
            GI+ Q    +H+ L  LT R +G  K  + GT+
Sbjct: 1111 GIRSQRSFTTHIDLKKLTTRQNGAKKSSYTGTN 1143


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 106 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 216
           K+V  +  D+LTQ T  C D+ +++++       L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 471 SCIQSLEYLNVQDPNS*ASSRNQR 400
           SC Q LE  N+ DP S  S  N R
Sbjct: 384 SCFQLLERYNLSDPTSDTSMTNVR 407


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 318 DKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 431
           D ++V  +A DN+D   FV E P +   SD ++K   L
Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,733
Number of Sequences: 5004
Number of extensions: 59530
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)